BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4636.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    62   4e-11

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 62.0 bits (149), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 38  LARVQRTKTLRIGAVRGAAPYYNKDLASGEWGGFMIDFARSLAASLNVKLDITETTWGNS 97
           L  +Q+   LR+ AV    P +          G  ID A  +A  L VK+++   T  N 
Sbjct: 26  LDDIQKKGVLRV-AVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGVKVELIPVTSANR 84

Query: 98  VLDLQTHKIDLFF-GMNPTPARREVINFS---EPLFLNAFTIVSKKEFKTWADLDKPEVK 153
           +  LQT K+DL    M   P R +VI+FS    P F   F      + K  A  D     
Sbjct: 85  IPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVF---GPADQKVAAPADLAGKT 141

Query: 154 IGVDIGSSHDQLVSRVCPH-ATIVRLEKADDATLALQTGRVDAQVLVWLLALNILKKNPA 212
           IGV  GS  D  +S++ P  ATI R E  +    +  + +V       ++A  I+ KNP 
Sbjct: 142 IGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNPP 201

Query: 213 LGKMTVPQPLEATSTNIGLPKEDDKAWAEAVNKWIAAERAAGKI 256
             K      ++ +  +IGL K ++K   E VN  IA  +  G +
Sbjct: 202 -KKPETKFLIKNSPCSIGLNKGEEK-LLEKVNAIIAQAKKDGSL 243


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 652,063
Number of extensions: 25860
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)