BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4633.p (257 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 239 1e-64 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 210 5e-56 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 164 5e-42 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 139 2e-34 gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 134 6e-33 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 239 bits (610), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 126/245 (51%), Positives = 166/245 (67%), Gaps = 10/245 (4%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 +I I +++KS+G + VLK I +++ G V+A+IG SGSGKSTLLRC+N L D GS+ + Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 69 GTRHFEFNGRKSHLPK-ERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKA 127 SHL K E EL R + GM+FQ FNLFPH++ N+M + V + Sbjct: 63 AG---------SHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEK 113 Query: 128 EARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 +ARA AM L+KVGL E+ D +P +LSGGQ+QR+AIARAL+M+P +L DE TSALDPEL Sbjct: 114 DARALAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPEL 173 Query: 188 VGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAA 247 V EVLNV+RGLA +GMT+I+VTHE+ FAREV D+VVFM G V E G P + +P Sbjct: 174 VNEVLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPE 233 Query: 248 TQAFL 252 + FL Sbjct: 234 LKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 210 bits (535), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 160/246 (65%), Gaps = 8/246 (3%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 MI++ + K +G VL D + ++A+G VV + GPSGSGKSTL++ +N L +G + + Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 69 GTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKAE 128 +G PK L++ R+R GMVFQ+F LFPH++ EN+ V VL+ + Sbjct: 61 -------DGISVGDPKTN-LSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPD 112 Query: 129 ARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 A + + L +VGLI D +P +LSGGQ+QR+AIARAL+M P MLFDE TSALDPE++ Sbjct: 113 ATERGLKYLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMI 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAAT 248 EVL+V+ GLA +GMTM++VTHE+ FA++VA++V+FM G++VE + R Sbjct: 173 NEVLDVMVGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRA 232 Query: 249 QAFLSR 254 + FL++ Sbjct: 233 RDFLAK 238 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 164 bits (415), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 143/251 (56%), Gaps = 16/251 (6%) Query: 10 IQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRIG 69 I+++++QK FG V L ++S++ G + A++GPSG GK+TLLR + L PD G V + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 70 TRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGM---VTVLRTPK 126 + H+ +ER++ G VFQH+ LF HMT EN+ G+ R + Sbjct: 63 GE----DASARHV-RERQV-------GFVFQHYALFKHMTVFENIAFGLRVRPAATRPSE 110 Query: 127 AEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPE 186 ++ + + LL+ V L AD YP +LSGGQ+QRIA+ARALA++P V+L DE ALD + Sbjct: 111 SQIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 Query: 187 LVGEVLNVIRGLAAD-GMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPRE 245 + E+ +R L D +T I VTH+ A EVADQ+V M G V + G P V ++P Sbjct: 171 VRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPAS 230 Query: 246 AATQAFLSRFN 256 FL N Sbjct: 231 PFVYGFLGNVN 241 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 141/250 (56%), Gaps = 14/250 (5%) Query: 8 SMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVR 67 ++++IR+L + FG++ V+ +IS+ I G ++GPSG GK+TLLR + VPD G + Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQIL 61 Query: 68 IGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKA 127 + + G P++R + RT VFQ++ LFPHMT N+ + + TPKA Sbjct: 62 L--DGVDLTGVP---PEQRPV-----RT--VFQNYALFPHMTVGGNIAFPL-EMANTPKA 108 Query: 128 EARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 E + + L+ V L A YP +LSGGQ+QR++IARAL +P ++L DE SALD +L Sbjct: 109 EIQKKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQL 168 Query: 188 VGEV-LNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREA 246 ++ + +I G+T I VTH+ A A ++ ++ M G V + P+++ +PR Sbjct: 169 REQMQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSR 228 Query: 247 ATQAFLSRFN 256 F+ N Sbjct: 229 FVADFIGTCN 238 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 134 bits (337), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 141/250 (56%), Gaps = 13/250 (5%) Query: 7 QSMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSV 66 ++++IR L ++GE +L +++++ RG V+A++G SGSGK+T+LR + P G V Sbjct: 2 SNLVEIRDLHFAYGERPILSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQAGQV 61 Query: 67 RIGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPK 126 + +G+ H + + R + GM+FQH LF ++ ENV + + Sbjct: 62 TV-------DGQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLREHTGLSE 114 Query: 127 AEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPE 186 R + L VGL A + P ++SGG +R+A+AR++A+ P+++++DE + LDP Sbjct: 115 ELIRDLVLMKLHTVGLRNAAQLMPAEISGGMARRVALARSIALDPELIMYDEPFAGLDPI 174 Query: 187 LVGEVLNVIRGLA-ADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPRE 245 +G N+IR L A G T ILV+H++ + +AD V F+ G +V G P++++ Sbjct: 175 SMGMTANLIRKLNDALGSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTPAEMM----- 229 Query: 246 AATQAFLSRF 255 A++ ++ +F Sbjct: 230 ASSDPYVKQF 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 552,686 Number of extensions: 21416 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 63 Length of query: 257 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 176 Effective length of database: 921,564 Effective search space: 162195264 Effective search space used: 162195264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)