BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4632.p (221 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 137 5e-34 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 103 1e-23 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 95 3e-21 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 80 1e-16 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 122/207 (58%), Gaps = 8/207 (3%) Query: 19 GFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEVFRCTPVLVQLVWFYYA 78 G YTL TV G++ G L+ + RLSS+ +S A+V + R P+L+ + WFY+ Sbjct: 19 GLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIFWFYFL 78 Query: 79 LPVLLD--------IQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQSEAGWALGMT 130 +P++L +Q+ A +A ++ ++ A++ EI+R GI SI GQ AG+ALG+T Sbjct: 79 MPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGYALGLT 138 Query: 131 RWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEV 190 Q M+ V+LPQAF+ M P L+ Q+I+ ++ SL+S+L V D + +A R +E+ Sbjct: 139 YRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDSRVVEM 198 Query: 191 YTLVAVIYFVILLPATIWAKRLENRLA 217 Y VA++YFV+ + K+L+ R A Sbjct: 199 YLFVAIVYFVLSFALSTLVKQLQKRFA 225 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 45 RLSSHGFISAPLRAFVEVFRCTPVLVQLVWFYYALPVLLDIQMSAGMAAMLSLALYGGAF 104 R S G + R ++E+F+ TP+L+QL ++ + L I++ A +AA L+L L+ +F Sbjct: 42 RTSKSGALRNVARIYIEIFQGTPLLMQLFLVFFGI-ALFGIEVPAWLAAGLTLTLWSASF 100 Query: 105 YSEIIRGGIVSIDIGQSEAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSL 164 +EI RG + +I GQ EA L M Q M+ VILPQA + PP + S+ +K T++ Sbjct: 101 LAEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAV 160 Query: 165 LSVLAVPDLLYQGQIIAHETYRPLEVYTLVAVIYFVILLPATIWAKRLENRLAAQHD 221 S++ +L +I + T+ P VY + YF++ P + +++ LE + A H Sbjct: 161 TSIIGFVELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAHS 217 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 10/209 (4%) Query: 19 GFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEVFRCTPVLVQLVWFYYA 78 G +TL+ + +VG +VG+GR S ++ A+VE+FR P+LVQ +Y+ Sbjct: 24 GLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFVWYFV 83 Query: 79 LP----------VLLDIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQSEAGWALG 128 +P + LD + A++ L + + +E +R GI ++ GQ AG+ALG Sbjct: 84 VPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAGYALG 143 Query: 129 MTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPL 188 +T Q + V+LP A++ + PPL ++ + +KNT++ + + +L ++ + + T+R Sbjct: 144 LTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTFRYF 203 Query: 189 EVYTLVAVIYFVILLPATIWAKRLENRLA 217 E + +IY VI + A +E RLA Sbjct: 204 EAFGAATLIYVVIAMTANRLMALVERRLA 232 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 1/190 (0%) Query: 2 YHWDFGSLWQFRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVE 61 Y ++F S + + ++ G T+ LG+ VG+ R ++ + A+VE Sbjct: 3 YQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAYVE 62 Query: 62 VFRCTPVLVQLVWFYYALPVLLDIQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQS 121 + R TP L+QL + ++ LP + +Q++ AA+L++ + GA+ +EIIR G+V++ GQ Sbjct: 63 LIRNTPFLIQLFFIFFGLPSI-GVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQI 121 Query: 122 EAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIA 181 EA +L MTR Q+ + +IL A +++ P L +Q ++ + +++ S +AV +L + I Sbjct: 122 EAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFIQ 181 Query: 182 HETYRPLEVY 191 +R E Y Sbjct: 182 GRNFRAFEAY 191 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 443,507 Number of extensions: 13884 Number of successful extensions: 72 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 4 Length of query: 221 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 141 Effective length of database: 925,261 Effective search space: 130461801 Effective search space used: 130461801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)