BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4631.p (421 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 315 3e-87 gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 313 1e-86 gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 296 1e-81 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 315 bits (808), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 177/419 (42%), Positives = 245/419 (58%), Gaps = 7/419 (1%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHDVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M++ V+GAG++GV+TAYFL E GH+VVV+ER VA E S G++G + S PWAAPG+ Sbjct: 1 MQVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGV 60 Query: 61 PAKSLKWSLQSWLGIEAALRFTPRLDAHQWKWLKAFLAQCTSERYAINKARMGRLARYSH 120 P L + L+S EA + W++ ++ + ERY IN+ RM R+ YS Sbjct: 61 PRSFLSYLLKS----EAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSR 116 Query: 121 TQLKQIRERLDIRYEQTTVGNLQLFRTQEGLDNAGLSTSVLQEAGVPFELLDADGCVAFD 180 ++ +RER + YEQT G LQLFRT+ L A S L E +P +LLDA A D Sbjct: 117 DIMQMLRERHQLDYEQTP-GYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVD 175 Query: 181 PGLHAARHEIKGGLLLPRDETGNCPLFARALASWLQAHGMEFHLSTEVQAIEVAGDQVSG 240 L+ + G L LP DE GNCPLF R + + QA G+EF ++V++IE + V Sbjct: 176 SALNP-NTPLAGALYLPEDEAGNCPLFTRQIRAQAQAMGVEFLFGSKVKSIEESKRGVH- 233 Query: 241 LRTRSGTLRADAYVVACASASVPMLRPLGLELPIYPVKGYAITVPVADPERAPRSGVMDE 300 L+ + A+ VVA + S +L PLGL LP+ VK Y T + + E AP + V+DE Sbjct: 234 LQIDDHSFSAECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFESAPVAAVVDE 293 Query: 301 YYKVAITRMGQHIRAAGTAEIGSWDTRVRPRDCATALKSLNNLYPQGADLSRIEYWAGLR 360 YK+AITRMG+ IR AGTAE+GS + +R T LK + +P + + +W+G Sbjct: 294 AYKIAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYNTAAFWSGSS 353 Query: 361 PMTPDGAPLIGATRYSNLWLNAGHGSNGWTTACGSSRIIADRISGVTSEIESADLEPQR 419 PDGAPL+GA R N++LN GHGS GW A GS +++AD ISG T +I+ L P R Sbjct: 354 LALPDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDIDLDGLTPSR 412 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 313 bits (802), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/423 (40%), Positives = 234/423 (55%), Gaps = 15/423 (3%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHDVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M++IVLG+GI+G +A+FL + GH+V VVER+ A ETS N + S+ATPWA G Sbjct: 63 MKVIVLGSGIIGTASAWFLNKAGHEVTVVERQPGAAQETSFANGCQISVSHATPWANKGA 122 Query: 61 PAKSLKWSLQSWLGIE-AALRFTPRLDAHQWKWLKAFLAQCTSERYAINKARMGRLARYS 119 P LK LG E A L + R + QWKW FL +CT +R N ++ +A YS Sbjct: 123 PLTILKA-----LGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYS 177 Query: 120 HTQLKQIRERLDIRYEQTTVGNLQLFRTQEGLDNAGLSTSVLQEAGVPFELLDADGCVAF 179 L+ +R+ +DI Y+ T G L + Q+ D + S SV++E G P E L + V Sbjct: 178 RQTLQAVRQEVDIDYDCLTRGILHFYTQQKDFDESLASASVMRELGCPREPLTVEQAVQL 237 Query: 180 DPGLHAARHEIKGGLLLPRDETGNCPLFARALASWLQAHGMEFHLSTEVQ---------A 230 +P L R +I G DE+G+ F LA Q G+ F +T V A Sbjct: 238 EPALAHIRKQIVGADFTETDESGDIYKFTTGLARKAQERGVHFEFNTTVTRLITEGTGAA 297 Query: 231 IEVAGDQVSGLRTRSGTLRADAYVVACASASVPMLRPLGLELPIYPVKGYAITVPVADPE 290 V G +V R +L ADA+V+A S SVPML+PLG+ L IYP KGY+ T P+ +P+ Sbjct: 298 ARVTGVEVINPEGRHMSLHADAFVMAMGSFSVPMLKPLGINLMIYPGKGYSATYPIVNPD 357 Query: 291 RAPRSGVMDEYYKVAITRMGQHIRAAGTAEIGSWDTRVRPRDCATALKSLNNLYPQGADL 350 AP ++D+ YK+ ++R+G +R AGT E + + C + L+P D Sbjct: 358 LAPAVSLIDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPDACDY 417 Query: 351 SRIEYWAGLRPMTPDGAPLIGATRYSNLWLNAGHGSNGWTTACGSSRIIADRISGVTSEI 410 S YWAGLRP+TP P IG T++SNL+LN GHGS GWT CGS R IAD ISGV E+ Sbjct: 418 SNPAYWAGLRPLTPSNVPYIGKTKFSNLYLNTGHGSLGWTMGCGSGRAIADIISGVQPEV 477 Query: 411 ESA 413 A Sbjct: 478 NFA 480 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 296 bits (758), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/421 (37%), Positives = 233/421 (55%), Gaps = 15/421 (3%) Query: 1 MRIIVLGAGIVGVTTAYFLRERGHDVVVVERRAEVAAETSVGNAGHVCPSYATPWAAPGM 60 M++IVLG+GI+G ++A+FL + GH+V V+ER+ A ETS N + S+A PWA P Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 61 PAKSLKWSLQSWLGIE-AALRFTPRLDAHQWKWLKAFLAQCTSERYAINKARMGRLARYS 119 P K LKW LG E A L + R + QWKW FL +CT R N ++ + YS Sbjct: 61 PMKVLKW-----LGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYS 115 Query: 120 HTQLKQIRERLDIRYEQTTVGNLQLFRTQEGLDNAGLSTSVLQEAGVPFELLDADGCVAF 179 L+ +R I Y+Q T G L + Q+ D++ + ++++ G P + + AD V Sbjct: 116 RQTLQAVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRI 175 Query: 180 DPGLHAARHEIKGGLLLPRDETGNCPLFARALASWLQAHGMEFHLSTEVQAI-------- 231 +P L + R++I GG DE+G+ F LA+ G++F +T V + Sbjct: 176 EPALASIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGAN 235 Query: 232 -EVAGDQVSGLRTRSGTLRADAYVVACASASVPMLRPLGLELPIYPVKGYAITVPVADPE 290 ++ G +V G R L ADAYV+A S S ++RPLG++L IYP KGY+ T V DP Sbjct: 236 AKITGVEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDPA 295 Query: 291 RAPRSGVMDEYYKVAITRMGQHIRAAGTAEIGSWDTRVRPRDCATALKSLNNLYPQGADL 350 AP + D+ YK+ ++R+G +R AGT E+ + + C + L+P D Sbjct: 296 AAPTVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDY 355 Query: 351 SRIEYWAGLRPMTPDGAPLIGATRYSNLWLNAGHGSNGWTTACGSSRIIADRISGVTSEI 410 YW GLRP+TP P IG T+YSNL+LN GHG+ GWT CGS R +A+ +SG+ ++ Sbjct: 356 DNPVYWTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSGLQPDL 415 Query: 411 E 411 + Sbjct: 416 D 416 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,027,504 Number of extensions: 43265 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 3 Length of query: 421 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 335 Effective length of database: 903,079 Effective search space: 302531465 Effective search space used: 302531465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)