BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4627.p
         (247 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980752|ref|YP_001353549.1| GTP cyclohydrolase I [Janthinob...    96   2e-21

>gi|152980752|ref|YP_001353549.1| GTP cyclohydrolase I
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 115 ERLNELMIVGPITVRSACSHHLCPIMGKVWVGVMPNEHSNLIGLSKYARLLEWVMSRPQI 174
           E+ NEL++V  I V S C HHL P  G   +G  PN    ++GLSK  RL++    R Q+
Sbjct: 70  EQYNELIVVRGIPVYSHCEHHLAPFFGTATIGYTPN--GKIVGLSKLTRLVDCFAKRLQV 127

Query: 175 QEEAVSQAADLLMQKLQPDGLAIVMEADHFCMHWRGVKDMDSKMINSVMRGSFLRDANLR 234
           QE    Q AD LM+ +QP  + +V+   H CM  RG++    + + S + G    +  LR
Sbjct: 128 QERLTIQIADTLMEHVQPLSVGVVIRCRHMCMESRGIRTPGEETVTSALLGEMRTNLGLR 187

Query: 235 REFLAL 240
            EFL L
Sbjct: 188 NEFLML 193


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 465,719
Number of extensions: 16656
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 166
Effective length of database: 921,564
Effective search space: 152979624
Effective search space used: 152979624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)