BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4623.p
         (414 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031 [...   427   e-121

>gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031
           [Janthinobacterium sp. Marseille]
          Length = 410

 Score =  427 bits (1097), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 286/410 (69%), Gaps = 1/410 (0%)

Query: 1   MSKQQFSERLCAWIDEHFEEEVDVLQQLIRIPTDTPPGNNAPHADAVAELVQSWGWNAEK 60
           M K    +++ AWID+H  E+V  L ++++ P+D PPGN APHA  +A L++   +  E+
Sbjct: 1   MDKTLLKQKIAAWIDQHAAEQVAFLAKVVQCPSDNPPGNCAPHALMMAALLEEMQFTVEQ 60

Query: 61  HPVPAEQVRDYGMQSITNLIVRRPYAEGGPTLALNAHGDVVPPGEGWTHDPYGGEVVDGR 120
           H VP E  R  G++S  NLIVR  + +G PT+ALNAHGDVVPPG GW+ DPY   V DG 
Sbjct: 61  HAVPNEFARSTGLESAINLIVREKFGDG-PTVALNAHGDVVPPGAGWSVDPYSATVRDGW 119

Query: 121 IYGRAAAVSKSDFASYLFATRALEALGAPLRGAVELHFTYDEEFGGLLGPGWLLEQKLTR 180
           + GR AAVSKSDFA+Y FA RAL+ L  PLRG VELH TYDEE GGL GPGWLL+Q L++
Sbjct: 120 MIGRGAAVSKSDFATYAFALRALKELSIPLRGQVELHLTYDEETGGLAGPGWLLQQGLSK 179

Query: 181 PDYVLAAGFSYNVVTAHNACLQFEVTVHGRATHGSMPETGHDALQAANAILNAIYGALPG 240
           PDY + AGFSYNV TAHN CL  E+ VHG + H + P+TGHDAL+AA  +L+A+Y     
Sbjct: 180 PDYAICAGFSYNVTTAHNGCLHLEIKVHGTSAHAARPDTGHDALEAATKLLSALYDYRNS 239

Query: 241 LKEIRSAIDGISHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPAQVEAGVRKLIE 300
           L++  SAI GI+ P+++VG I+GG NTNVVP +V L++DRR+IPEE P +VEA +R +IE
Sbjct: 240 LQQRTSAISGITSPSLVVGMINGGINTNVVPDEVTLRLDRRIIPEEIPEEVEAELRAVIE 299

Query: 301 DAVAGWPGIRVEIRRLLLARALRPLPGHEKLVQSLLRNAQQVMGETLTTQGSALYTDARL 360
           + + G PGIR E++R+LLA   +P+    +L   +   A   +GE +T  G  LY+DARL
Sbjct: 300 NTLRGMPGIRSEVKRILLASPFKPVGDAARLRDIVCTEASAALGEAVTPIGVPLYSDARL 359

Query: 361 YGEQGIPVVLFGAGPRTLMESNAKQADENLTLDDLKKATKVVALMLLDFL 410
           Y E G+  V++GAGPRTL+E+N  +ADE + L  L  A+K +A  LL+ L
Sbjct: 360 YAEAGVATVMYGAGPRTLLEANGHRADEKVPLFTLTVASKAIAWSLLELL 409


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 995,723
Number of extensions: 42151
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 328
Effective length of database: 903,079
Effective search space: 296209912
Effective search space used: 296209912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)