BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4622.p (495 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 98 9e-22 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 91 2e-19 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 89 6e-19 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 87 2e-18 gi|152982364|ref|YP_001355202.1| two-component sensor histidine ... 84 2e-17 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 144/307 (46%), Gaps = 21/307 (6%) Query: 196 RQLLTAQVLGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFD---QPIEVRGPADI 252 + +L L V+A+++A+C W RP+ ++ + I + +R D P EV P ++ Sbjct: 180 KTILWWATLIVSVIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEV--PIEL 237 Query: 253 RRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLNDNQRE 312 L + + R+ D A+ + F ++HEL+TP+ L ++ VA + + E Sbjct: 238 AELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNL-----VMQTEVALSQSRSSAE 292 Query: 313 IARILRQNTQSLQTQ---IEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLAR 369 IL N + + I D+L + D +H + + A++ + D + LA Sbjct: 293 YREILYSNLEEFERMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFD--YFEALAE 350 Query: 370 --TLTVEIEGAARTVVVDPEKMAIVLSNLLSNAVRFSPEGGCIRFLLAEGPGVVRVECID 427 +T+ +EG A V D E M LSNL+SNA+++S G + L++ V V + Sbjct: 351 EANITLTLEGNAAPVKADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVEN 410 Query: 428 QGPGVAPTDAARIFEPFYQGLHQPTGARR--GNGIGLSVVREYVLAHSGKVYLVPREGGA 485 +A D ++F+ F++ P+ R+ G G+GL++V+ AH G V + Sbjct: 411 PAGQIAREDLPKLFDRFFRT--DPSRKRKASGAGLGLAIVKSIAEAHGGTVQATSEQAQI 468 Query: 486 HFRIELP 492 F I LP Sbjct: 469 KFEITLP 475 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 33/297 (11%) Query: 202 QVLGAIVLAVLLAFCFGLWLS----RPMARLEQAIGRLGDNRFDQPIEVRGPADIRRLGQ 257 Q LG + VLL+ L +S +P+ARL A + + P+ RGP +IR Sbjct: 160 QWLGWGAVTVLLSLLGALMISGLINQPLARLTAATRAIATGQRPAPLPERGPTEIREANH 219 Query: 258 QLDWLRQRLADLEAEKSRFLRHVSHELKTPLAAL---CEGAALLDDGVAGQLNDNQREIA 314 + + L +E++++ L +SH+L+TPLA + E A L D AG Sbjct: 220 SFNQMVDDLNRVESDRAVVLAGISHDLRTPLARMQLEVELAGLPADARAG---------- 269 Query: 315 RILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQ-RLQWLARTLTV 373 ++ + + + I L Y + S + H P+D+ AL+H + R+Q + + Sbjct: 270 --MQSDLEQMDAIIGQFLDYAKPSDSS---HFQPIDMTALMHSAAQEALRMQDVRINSKI 324 Query: 374 EIEGAARTVVVDPEKMAIVLSNLLSNAVRFS--PEGGCIRFLL---AEGPGVVRVECIDQ 428 + + +D ++ V++NL+ NA R+ P + L AEG V+ +E D Sbjct: 325 DDKLVVLGNAIDIKR---VVNNLIENARRYGKLPGNDYVEIDLRCQAEGDKVI-IEVTDH 380 Query: 429 GPGVAPTDAARIFEPFYQGLHQPTGARRGNGIGLSVVREYVLAHSGKVYLVPREGGA 485 G GV + R+ PF + + G G G+GL++V V HSGK+ L+ REGG Sbjct: 381 GAGVPEAEIDRLLRPFTR-MDSARGQANGAGLGLAIVDRIVKRHSGKLQLLNREGGG 436 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 9/225 (4%) Query: 273 KSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLNDNQREIARILRQNTQSLQTQIEDLL 332 K+R++ +SHEL++PL ++ + +L QL+ R + ++++ + L +++LL Sbjct: 647 KTRYVAGISHELRSPLNSILGYSQILLKN--EQLDAAPRTAIQTIQRSGEHLLGLVDELL 704 Query: 333 RYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARTLTVEIEGAA---RTVVVDPEKM 389 + D R+ P P+ A + ++ R Q A+ L ++ V+ D +++ Sbjct: 705 DLARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRL 764 Query: 390 AIVLSNLLSNAVRFSPEGGCIRFLLAEGPGV-VRVECIDQGPGVAPTDAARIFEPFYQGL 448 +L NLL+NA+RF+ G L E GV +R + ID G G+A D RIF+PF +G Sbjct: 765 RQILINLLTNALRFTDTGSVT--LHVECTGVSMRFDVIDTGIGIAVQDRQRIFQPFERGA 822 Query: 449 HQPTGARRGNGIGLSVVREYVLAHSGKVYLVPREG-GAHFRIELP 492 G G+GL++ + +L +G + L+ +G G+ F + LP Sbjct: 823 AGRLRGEPGAGLGLAITEKLILMMNGSLNLISTQGQGSTFVVRLP 867 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 26/263 (9%) Query: 235 LGDNRFDQPIEVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEG 294 LG + I+V G ++ RL + R+ L + L + SHEL++PLA + Sbjct: 185 LGAGQLSTRIKVEGKDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRMA 244 Query: 295 AALLDDGVAGQLNDNQREIARILRQNTQSLQTQIEDLLRYN--EVSFDAQRIHPVPVDLR 352 L+ D Q E+ L++N L I+++L + + + DA ++ P+DL Sbjct: 245 VELM-------AADAQPEMRNELKRNIGELDQLIDEILLASRLDATADATQVFE-PIDLT 296 Query: 353 ALLHKVIDDQRLQWLARTLTVEIEGAARTVVVDPEKMAIVLSNLLSNAVRFSPEGGCIRF 412 AL+ + + R+ T +VEI G AR + +M + NLL NA R+ G I Sbjct: 297 ALVAE--ECARIDAQLETQSVEIPGDARLL----RRM---VRNLLENARRYG-NGTAIDV 346 Query: 413 LLAEGPGVVRVECIDQGPGVAPTDAARIFEPFYQGLHQPTGARR--GNGIGLSVVREYVL 470 L + V ++ D GPGV + IF PFY+ P + R G G+GLS+V++ Sbjct: 347 SLEKTGNKVVLQVCDGGPGVPVAERENIFAPFYR---LPGASEREGGVGLGLSLVQQIAR 403 Query: 471 AHSGKVYLVPREGGAH-FRIELP 492 AH G+V REGG F++ LP Sbjct: 404 AHGGEVVCTGREGGGSCFKVTLP 426 >gi|152982364|ref|YP_001355202.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 676 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 6/222 (2%) Query: 272 EKSRFLRHVSHELKTPLAALCEGAA-LLDDGVAGQLNDNQREIARILRQNTQSLQTQIED 330 E+ +F+ VSHEL+TPLA + A + +G G R + +I R T+ L + Sbjct: 441 EQQQFIAMVSHELRTPLAVIDAAAQNMTREGEQGSAKAPLR-LEKIHRA-TERLSSLFTH 498 Query: 331 LLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARTLTVEIEGAARTVVVDPEKMA 390 L + A I P L LL ++ + + E + V D + + Sbjct: 499 YLSSERLKMFAHGIQPTNTTLHLLLEDAVNMAKPLADNHQFLIASEAVKKPVRADADILR 558 Query: 391 IVLSNLLSNAVRFSPEGGCIRFLLAEGPGVVRVECIDQGPGVAPTDAARIFEPFYQGLHQ 450 +V+S LL+NAV+++P G + ++ D GPG+A + +IF +Y+G + Sbjct: 559 LVISTLLNNAVKYTPAGSTVVLRAEPVSNGWHIDVTDNGPGIAADEREKIFNRYYRG--R 616 Query: 451 PTGARRGNGIGLSVVREYVLAHSGKVYLVPR-EGGAHFRIEL 491 +G++ G G+GL++ R + H G + L+ GG+ FRI L Sbjct: 617 ISGSKAGTGLGLTLARHLIERHGGTLELLDNPAGGSTFRIFL 658 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,034,799 Number of extensions: 41027 Number of successful extensions: 266 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 26 Length of query: 495 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 408 Effective length of database: 899,382 Effective search space: 366947856 Effective search space used: 366947856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)