BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4620.p (460 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979868|ref|YP_001354671.1| two-components system response ... 303 2e-83 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 292 3e-80 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 268 4e-73 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 223 2e-59 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 213 2e-56 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 303 bits (776), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 187/389 (48%), Positives = 246/389 (63%), Gaps = 11/389 (2%) Query: 4 TTP-LLLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMD 62 T+P +L+VDD+ DL LL + L G I + ++ A L ALV+TD+RLP Sbjct: 2 TSPRILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGL 61 Query: 63 GLALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSL 122 G+ L EI ++Y PV ++TA G+ +AV A GAF YL+KP L V AL + Sbjct: 62 GIELVQEITAQYKNTPVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVMVRSALRI 121 Query: 123 SAPAQEAPDAAWRAD----IISRSQRIDELLAEARLVAASDASLLIRGESGTGKELLARA 178 S A E P A ++ +S+ + L A+ +A S A + I GESG+GKEL AR Sbjct: 122 SQ-ADEQPSAKVAVSPALRLMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARD 180 Query: 179 IHRASPRADKPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAADGGTLFLDE 238 IH S R+DKPF+AVNCGAIPE L+E+E FG+ KGAFTGAV+ R+G FQAA+GGTL LDE Sbjct: 181 IHAQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDE 240 Query: 239 IGDMPPALQVKLLRVLQEKTVRQVGANESGEVNVRVISATHRDLEIAMMQGQFRQDLYYR 298 + D+P A+QVKLLR +QE+ VR+VGA V+VR+ISATH++L + +G FRQDLYYR Sbjct: 241 VADLPLAMQVKLLRAIQERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYR 300 Query: 299 LNVVALNLPSLEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEVLSLAHWPGNVRQL 358 LNV+ LNLP L ER +DIALLA L + A RLT P ALE L +PGNVR+L Sbjct: 301 LNVIELNLPPLRERLDDIALLAKAILTRLDAGQ-ARLT---PAALEALLQYSFPGNVREL 356 Query: 359 YNVVEQVCALSTAPLIPAS-LVQRALRVP 386 N++E+ A + +I S LV +A P Sbjct: 357 ENILERALAFANDGVIEVSDLVLKAAHTP 385 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 292 bits (748), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 233/378 (61%), Gaps = 13/378 (3%) Query: 6 PLLLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLA 65 P+ +VDDD + +L L + +A AL L P ++++D+R+PG GL Sbjct: 3 PIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESGLE 62 Query: 66 LFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFD-GHVL------LDKVAQ 118 L +++++P LPVI++TA + AV A GAF YL KPFD H + L++ + Sbjct: 63 LLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEESLR 122 Query: 119 ALSLSAPAQEAPDAAWRADIISRSQRIDELLAEARLVAASDASLLIRGESGTGKELLARA 178 S+ + E P+ I+ ++ + ++ ++ S+ ++LI GESG+GKEL+ARA Sbjct: 123 ETSVEQVSAETPE------ILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARA 176 Query: 179 IHRASPRADKPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAADGGTLFLDE 238 +H+ SPRA +PFIA+N AIP+ LLESELFGH +GAFTGA R G F+ A+ GTLFLDE Sbjct: 177 LHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDE 236 Query: 239 IGDMPPALQVKLLRVLQEKTVRQVGANESGEVNVRVISATHRDLEIAMMQGQFRQDLYYR 298 IGDMP LQ +LLRVL + +VG ++ + NVRVI+ATH++LE + +G FR+DLY+R Sbjct: 237 IGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHR 296 Query: 299 LNVVALNLPSLEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEVLSLAHWPGNVRQL 358 LNV+ L LPSL ERREDI +L HFL+ A + + + A++ LS PGNVRQL Sbjct: 297 LNVIRLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQL 356 Query: 359 YNVVEQVCALSTAPLIPA 376 N+ + ++ + A Sbjct: 357 ENLCNWITVMAPGQTVEA 374 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 268 bits (686), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 250/445 (56%), Gaps = 20/445 (4%) Query: 7 LLLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 +L+VDD+P + L L R+ AV+S EAA L L+I D LPG G+ Sbjct: 45 ILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGVDW 104 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLSAPA 126 EIR V+L+TA + A+ A GA +L KPF + +L + + + Sbjct: 105 LQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRCFDRAHLR 164 Query: 127 QEA----------PDAAWRADIISRSQRIDELLAEARLVAASDASLLIRGESGTGKELLA 176 +E D A ++ S ++ + + +A +++LI GESGTGKE+ A Sbjct: 165 RENFILRRELDSHIDLAGVEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAA 224 Query: 177 RAIHRASPRADKPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAADGGTLFL 236 RA+H+ S R+ F+ +NCGA+ ++ESELFGH+KGAF+GA REGLF A GGTLFL Sbjct: 225 RAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTLFL 284 Query: 237 DEIGDMPPALQVKLLRVLQEKTVRQVGANESGEVNVRVISATHRDLEIAMMQGQFRQDLY 296 DE+ ++P A+QVKLLRVL+EK +R VGA V+VRVI+AT+R++E A+ +G+FRQDLY Sbjct: 285 DEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLY 344 Query: 297 YRLNVVALNLPSLEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEVLSLA--HWPGN 354 YRLNVV L++P L ER EDI LA +F++ +A + + PD+ SLA WPGN Sbjct: 345 YRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLG--VPAKKPDSALFASLAGYSWPGN 402 Query: 355 VRQLYNVVEQVCALSTAPLIPASLVQRALRVPTLDLLRYAEAKQKFERDYLVRLLKLTDG 414 VR+L N++E+ L + A+ D+ A KQ +++++L G Sbjct: 403 VRELRNLIERWLILGNISDVTAA-NNTGSTTTNGDVTLEAVEKQ-----HILKILAEVGG 456 Query: 415 NVSDAARLADRNRTEFYRLLQKNGL 439 N ++A R +R R + G+ Sbjct: 457 NKTEAGRRLGISRKTLERKCAEWGV 481 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 223 bits (568), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/270 (48%), Positives = 178/270 (65%), Gaps = 14/270 (5%) Query: 136 ADIISRSQRIDELLAEARLVAASDASLLIRGESGTGKELLARAIHRASPRADKPFIAVNC 195 A +I+RS + ++ A A+ VA A++LI GESG GKE+L R IH+ S PF+ +NC Sbjct: 246 AGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINC 305 Query: 196 GAIPEQLLESELFGHVKGAFTGAVEH-REGLFQAADGGTLFLDEIGDMPPALQVKLLRVL 254 GAIP LLESELFG+ GAFTGA + G+ + AD GTLFLDEIG++P LQVKLL+VL Sbjct: 306 GAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVL 365 Query: 255 QEKTVRQVGANESGEVNVRVISATHRDLEIAMMQGQFRQDLYYRLNVVALNLPSLEERRE 314 Q++T+ ++G +V+VRV++AT+RDL+ + QFR DL+YRLNVV L++P L ERRE Sbjct: 366 QDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERRE 425 Query: 315 DIALLANHFLKTIAAKY--PKRLTGFAPDALEVLSLAHWPGNVRQLYNVVEQVCALSTAP 372 DI L H+L + A+Y KRL+ AL L WPGNVR+L N+VE++ + Sbjct: 426 DILPLIQHYLDELNAQYDLDKRLS---EQALAALLDYDWPGNVRELRNMVERLVVTA--- 479 Query: 373 LIPASLVQRALRVPTLDLLRYAEAKQKFER 402 P SL+ R+ +PT LLR +E + R Sbjct: 480 --PESLI-RSDSLPT--LLRSSELESDLAR 504 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 213 bits (541), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/263 (46%), Positives = 166/263 (63%), Gaps = 3/263 (1%) Query: 123 SAPAQEAPDAAWRADIISRSQRIDELLAEARLVAASDASLLIRGESGTGKELLARAIHRA 182 S+P A D+ S + +L VA + A++LI GESGTGKEL+A+AIH+ Sbjct: 30 SSPTISLNKLARCGDLYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQL 89 Query: 183 SPRADKPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAADGGTLFLDEIGDM 242 S DKPF+A+NC A+ QL+E+ELFGH +G+FTGA+ ++G F+ ADGGTLFLDE+ +M Sbjct: 90 SREQDKPFVALNCSAVSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEM 149 Query: 243 PPALQVKLLRVLQEKTVRQVGANESGEVNVRVISATHRDLEIAMMQGQFRQDLYYRLNVV 302 +QVKLLRVL+ ++GA E EV VRV++AT+RD AM G R DL+YRL V Sbjct: 150 SLDMQVKLLRVLETSRFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVF 209 Query: 303 ALNLPSLEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEVLSLAHWPGNVRQLYNVV 362 L+LP L ER EDI LLA FL + + R F+ + +L+ +WPGNVR+L NVV Sbjct: 210 PLDLPPLRERGEDIRLLAGLFLDQLNEE-DGRNRVFSKASWRLLNEYNWPGNVRELKNVV 268 Query: 363 EQ--VCALSTAPLIPASLVQRAL 383 + + A L+PA R++ Sbjct: 269 HRAYIMADQELELLPAVNPNRSM 291 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,000,734 Number of extensions: 41231 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 27 Length of query: 460 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 374 Effective length of database: 903,079 Effective search space: 337751546 Effective search space used: 337751546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)