BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4618.p
         (203 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981685|ref|YP_001353508.1| urease accessory protein UreJ [...   296   7e-82

>gi|152981685|ref|YP_001353508.1| urease accessory protein UreJ
           [Janthinobacterium sp. Marseille]
          Length = 204

 Score =  296 bits (758), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 172/201 (85%)

Query: 1   MLTLSTKTRARLGVLAITVLATGVALAHPGHPDSTMNGSASMAAGFAHPFSGIDHLLAML 60
           M +LS K  AR+GV A+  LA G ALAHP HP++ MN + S ++GF+HPFSGIDHLLAML
Sbjct: 1   MFSLSNKAAARIGVFALGCLAVGSALAHPDHPETMMNSTMSFSSGFSHPFSGIDHLLAML 60

Query: 61  AVGVWAAQNKQRALWVLPLAFPLMMVAGALLAFSGVQVPGVETGIAASVAVLGLLIAFAV 120
           AVG+WA Q K+ ALWVL LAFPLMMVAGALLA SG Q+P VE+GIAASVAVLGLLIAFAV
Sbjct: 61  AVGLWATQLKRSALWVLTLAFPLMMVAGALLAMSGFQLPAVESGIAASVAVLGLLIAFAV 120

Query: 121 RMPLWGSTLVVSLFAMFHGYAHGVELPHGSSAALYGTGFIVATALLHAAGLGIGLVAGQK 180
           +MPLW ST +VS+FA+FHGYAHG ELPHGSSAALYG GF++ATALLHA GL IGLVAG++
Sbjct: 121 KMPLWASTAIVSVFALFHGYAHGSELPHGSSAALYGAGFVLATALLHATGLLIGLVAGKQ 180

Query: 181 MADRVVRIGGVGIAAVGAYLL 201
           MAD+VVRIGG GIAAVG YLL
Sbjct: 181 MADKVVRIGGAGIAAVGTYLL 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 417,402
Number of extensions: 16692
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 124
Effective length of database: 928,958
Effective search space: 115190792
Effective search space used: 115190792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)