BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4617.p
         (210 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981035|ref|YP_001353507.1| urease accessory protein UreG [...   399   e-113

>gi|152981035|ref|YP_001353507.1| urease accessory protein UreG
           [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  399 bits (1026), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/208 (96%), Positives = 204/208 (98%), Gaps = 1/208 (0%)

Query: 1   MSNSTS-NPLRVGIGGPVGSGKTALCEMLCKRMRDHYDMAVITNDIYTKEDMEILLRADA 59
           MSN +S NPLRVGIGGPVGSGKTALCEMLCKRMRD+YDMAVITNDIYTKEDMEILLRADA
Sbjct: 1   MSNPSSPNPLRVGIGGPVGSGKTALCEMLCKRMRDNYDMAVITNDIYTKEDMEILLRADA 60

Query: 60  LPAERLMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPEL 119
           LPAERLMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPEL
Sbjct: 61  LPAERLMGVETGGCPHTAIREDASINLEAIARMSADFPDLDLILVESGGDNLAATFSPEL 120

Query: 120 SDLTIYVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAADAKRMRGERP 179
           SDLTIYVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMA DAKRMRGERP
Sbjct: 121 SDLTIYVIDVAGGEKIPRKGGPGITRSDLLIINKTDLAPYVGANLDIMAQDAKRMRGERP 180

Query: 180 FVFTNLRSGEGVEKVIDYIRKQGLLDEK 207
           FVFTNLRSG+GVE VI+YIRKQGLLDEK
Sbjct: 181 FVFTNLRSGDGVETVIEYIRKQGLLDEK 208


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 520,800
Number of extensions: 22387
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 131
Effective length of database: 928,958
Effective search space: 121693498
Effective search space used: 121693498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)