BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4615.p
         (177 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981694|ref|YP_001353505.1| urease accessory protein UreE [...   253   4e-69

>gi|152981694|ref|YP_001353505.1| urease accessory protein UreE
           [Janthinobacterium sp. Marseille]
          Length = 170

 Score =  253 bits (647), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 139/175 (79%), Positives = 149/175 (85%), Gaps = 5/175 (2%)

Query: 1   MLTLNTKIAQADQIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRGDD 60
           MLTLNTK+ +ADQIDGEL LPYDQREKSRLRAT+ SGEDVAVFTVRGT+LRDGD+LRGDD
Sbjct: 1   MLTLNTKLEKADQIDGELILPYDQREKSRLRATMVSGEDVAVFTVRGTILRDGDILRGDD 60

Query: 61  GRVVKILAKAEATYRVDASDAHLLLRCAFHLGNRHTQAHIGHEAGVGFLRIRKDPVLKEM 120
           GR+VKI A  E TYRV+A   H LLRCAFHLGNRHTQA IG+    GFLRIRKD VLKEM
Sbjct: 61  GRIVKITAAKEPTYRVEALSPHQLLRCAFHLGNRHTQAQIGN----GFLRIRKDAVLKEM 116

Query: 121 LEGLGARVSEEQAAFEPEAGAYGGGHHHHGDDHHHHPLAPIPLRQKIHRPSDKKE 175
           LEGLGA+V EE AAFEPE+GAY GG HHH  D  HHPLAPIPLRQKIHRPSDK E
Sbjct: 117 LEGLGAKVEEELAAFEPESGAY-GGGHHHHGDDGHHPLAPIPLRQKIHRPSDKAE 170


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 312,658
Number of extensions: 9749
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 100
Effective length of database: 936,352
Effective search space: 93635200
Effective search space used: 93635200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)