BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4614.p
         (566 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980166|ref|YP_001353504.1| urease subunit alpha [Janthinob...  1099   0.0  

>gi|152980166|ref|YP_001353504.1| urease subunit alpha
           [Janthinobacterium sp. Marseille]
          Length = 566

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/566 (92%), Positives = 549/566 (96%)

Query: 1   MSKISRSAYAEMFGPTVGDRVRLADTELFLEVEKDYTIYGEEVKFGGGKVIRDGMGQSQR 60
           MSKISR AYAE+FGPT GDR+RLADTELF+E+EKD+T YGEEVKFGGGKVIRDGMGQSQR
Sbjct: 1   MSKISRQAYAEIFGPTTGDRLRLADTELFIEIEKDFTTYGEEVKFGGGKVIRDGMGQSQR 60

Query: 61  AHADVMDTVITNALIVDHWGIVKADIGIKSGKIAGIGKAGNPDIQPGVTMAIGGATEIIA 120
            + DVMDTVITNA+IV+HWGIVKADIG+K GKIAGIGKAGNPDIQP VTMAIGGATEIIA
Sbjct: 61  NYKDVMDTVITNAVIVEHWGIVKADIGLKGGKIAGIGKAGNPDIQPDVTMAIGGATEIIA 120

Query: 121 GEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHSM 180
           GEGMIVTAGG+D+HIHFICPQQIEEALMSGVTTM+GGGTGPAVGTAATTCTPGPWHIHSM
Sbjct: 121 GEGMIVTAGGVDTHIHFICPQQIEEALMSGVTTMIGGGTGPAVGTAATTCTPGPWHIHSM 180

Query: 181 LAAADAFPMNLGFLGKGNVSLPLPLEEQIRAGAIGLKLHEDWGSTPAAIDNCLTVADRMD 240
           L+AADAFPMNLGFLGKGNVSLP PLEEQI AGAIGLKLHEDWGSTPAAIDNCL+VADR+D
Sbjct: 181 LSAADAFPMNLGFLGKGNVSLPTPLEEQIHAGAIGLKLHEDWGSTPAAIDNCLSVADRLD 240

Query: 241 IQVAIHTDTLNEGGFLEHTLAAFKDRTIHTFHTEGAGGGHAPDIIAAVGEGNVLPSSTNP 300
           +QVAIH+DTLNEGGFLEHTLAAFKDRTIHTFHTEGAGGGHAPDIIAAVG+ NVLPSSTNP
Sbjct: 241 VQVAIHSDTLNEGGFLEHTLAAFKDRTIHTFHTEGAGGGHAPDIIAAVGQANVLPSSTNP 300

Query: 301 TRPFTVNTLDEHLDMLMVCHHLDPAIAEDIAFAESRIRRETIAAEDILHDIGAISMMSSD 360
           TRPFTVNTLDEHLDMLMVCHHLDPAIAED+AFAESRIRRETIAAEDILHDIGAISMMSSD
Sbjct: 301 TRPFTVNTLDEHLDMLMVCHHLDPAIAEDVAFAESRIRRETIAAEDILHDIGAISMMSSD 360

Query: 361 SQAMGRVGEVIMRTWQTAHKMKVQRGSLKEDSSRNDNFRIKRYIAKYTINPAITHGISHV 420
           SQAMGRVGEVIMRTWQTAHKMKVQRGSL  D +RNDNFR+KRYIAKYTINPAITHGISHV
Sbjct: 361 SQAMGRVGEVIMRTWQTAHKMKVQRGSLAGDPARNDNFRVKRYIAKYTINPAITHGISHV 420

Query: 421 VGSLEVGKIADIVLWKPAFFGAKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY 480
           VGSLEVGK+ADIVLWKPAFFG KPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY
Sbjct: 421 VGSLEVGKVADIVLWKPAFFGVKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY 480

Query: 481 GGGLKTSMTFVSQAAFDAGIGEQLKLNKPVVAVKNMRHLRKRDMIHNGATPKMEVDSETY 540
           GGGLKTSMTFVSQ+AFDAGIG+ LKLNKPVVAVKNMRHLRKRDMIHN ATPKMEVDSETY
Sbjct: 481 GGGLKTSMTFVSQSAFDAGIGDMLKLNKPVVAVKNMRHLRKRDMIHNSATPKMEVDSETY 540

Query: 541 EVRADGELLVCEPARSLPLAQRYFLF 566
           EVRADGELLVCEPA+ LPLAQRYFLF
Sbjct: 541 EVRADGELLVCEPAKILPLAQRYFLF 566


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,248,968
Number of extensions: 51586
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 478
Effective length of database: 895,685
Effective search space: 428137430
Effective search space used: 428137430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)