BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4611.p
         (287 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981291|ref|YP_001353501.1| urease accessory protein UreD [...   394   e-111

>gi|152981291|ref|YP_001353501.1| urease accessory protein UreD
           [Janthinobacterium sp. Marseille]
          Length = 296

 Score =  394 bits (1012), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/272 (69%), Positives = 216/272 (79%)

Query: 16  DQARLALGFADDQGTTRLLRRQHFGPLRVQKPLYPEDPSICHAIIVHPPGGIVGGDQLSI 75
           DQARL+L F DD GTTR+  R HFGPLRVQK LYPE P++CHAIIVHPPGGIVGGDQL+I
Sbjct: 25  DQARLSLAFTDDAGTTRMTERSHFGPLRVQKTLYPEHPAVCHAIIVHPPGGIVGGDQLTI 84

Query: 76  TAEVGERAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWLPQETIFFDGADVRME 135
           TA VG+RAHALLTTPGAGKWYRANGQ S+Q V L+  A A LEWLPQETIFF+ ADVR+E
Sbjct: 85  TARVGDRAHALLTTPGAGKWYRANGQLSQQQVSLEVGADAALEWLPQETIFFNEADVRLE 144

Query: 136 HEVTLAADAAYLGAEILCFGRTASGESFATGAISQRTSIRRGGKLLWFEQGRLQAQAGAM 195
           H VTLAADA Y+G EILCFGRTASGE+F +G ++QRTSIRRGGKLLWFEQG LQA++ +M
Sbjct: 145 HNVTLAADARYIGGEILCFGRTASGETFDSGRVAQRTSIRRGGKLLWFEQGALQARSTSM 204

Query: 196 QGALALDGQTICATLIAVGDGMDAALLGRLREHIGGLQLEGRSGATLMKQVFIARYMGQS 255
              L+L G T+CATLIAVG  M+ A L  LRE    L   GRSGAT MKQV +ARY+G S
Sbjct: 205 HSPLSLAGYTVCATLIAVGKTMNGAFLNELREESSALAQGGRSGATQMKQVLVARYLGHS 264

Query: 256 SLVARQWLHAAWHVLRPAVTGREAAIPRIWNT 287
           S  AR W+  AW  +RP +  R+A IPRIWNT
Sbjct: 265 SETARLWMTRAWQRIRPELMQRDAVIPRIWNT 296


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 658,683
Number of extensions: 24478
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 205
Effective length of database: 917,867
Effective search space: 188162735
Effective search space used: 188162735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)