BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4610.p (232 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 425 e-120 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 164 4e-42 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 152 1e-38 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 149 1e-37 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 145 2e-36 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 425 bits (1093), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/232 (89%), Positives = 222/232 (95%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMF 60 MLQVN+LNQYYGAAHTLRG+SL V+KGK LSLLGRNGVGKTTLLKCLMGVLPVA GNV Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 +G+DITKLKPHQRA LGIAYVPQGREIFARLTVEEN+LMGMAT SG++AS IKGEVYELF Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 +RGDIGILLCEQYFDFARELADTFVV+SRGEVVA+G+Q +MD ++VKKHLAV Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNVKKHLAV 232 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 164 bits (415), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 140/224 (62%), Gaps = 6/224 (2%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMF 60 +L++ L+ +YG +H L G+ + +Q G+++SLLGRNG G++T +K MG++ A G + F Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV-AATGTIRF 62 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 +G++I L ++ A+ G+ YV + REIF L+V +N+++G S A ++Y LF Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSAD----DMYRLF 118 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P L+E H + G LSGG+QQ LA+ R L+ +P+LI++DEPTEG+ P ++ + + L Sbjct: 119 PRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELV 178 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGE 224 QRG + +LL EQ A +++ VM G+VV G+ + + Sbjct: 179 QRG-VSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQAD 221 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 152 bits (385), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 137/225 (60%), Gaps = 6/225 (2%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAR--GNV 58 +L+++ L YG ++GV L+V KG++++L+G NG GKTT LK + G LP R G++ Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 59 MFEGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRR--ASTIKGEV 116 + GQ I L + + +A VP+GR +F R++++EN+LMG T + A+ I + Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADID-KW 123 Query: 117 YELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVI 176 + +FP LKE + G LSGG+QQ LA+ARAL++ P+L++LDEP+ G+ P +++ I VI Sbjct: 124 FGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVI 183 Query: 177 SLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 + +G I ILL EQ A + A+ VM G V G QM Sbjct: 184 RTVSAQG-ITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQM 227 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 149 bits (377), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 135/226 (59%), Gaps = 10/226 (4%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMF 60 ML++ E+ YGA + +SL+V +G++++L+G NG GK+T L+ + G+ P+A G++ Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIK-----GE 115 G ++ P + GI++ P+GR +F +LTV ENM MG + RR K Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMG----AYRRKDKAKVRDDMER 131 Query: 116 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 175 +++ FP L+E + + G LSGG+QQ LAIARAL++ P+L++ DEP+ G+ P+I++ I + Sbjct: 132 MFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSL 191 Query: 176 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 I +R G +L+ EQ A + D ++ G +V G+ +M Sbjct: 192 IREIRSEGTT-VLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEM 236 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 2 LQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMFE 61 L V L Y + L VS++V GK+ +LG NG GK+TL++ ++G+ P +G +++ Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 62 GQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIK----GEVY 117 G+++ K H GI+ +P+GR++F R+TV EN+ +G S +ST+ VY Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLES---SSTVVRDRLARVY 120 Query: 118 ELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVIS 177 E+FP LKE + G +SGG+Q ++I R L+AEPKL+++DEP+ G+ P +K+ +VI Sbjct: 121 EIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIK 180 Query: 178 LLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGED 225 + G I +LL EQ ++ V+S+G V+A GT + + D Sbjct: 181 QINALG-ITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSND 227 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 477,732 Number of extensions: 18157 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 61 Length of query: 232 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 152 Effective length of database: 925,261 Effective search space: 140639672 Effective search space used: 140639672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)