BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4609.p (289 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 504 e-144 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 147 8e-37 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 126 1e-30 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 119 2e-28 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 112 2e-26 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 504 bits (1299), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/269 (90%), Positives = 260/269 (96%) Query: 21 DTPRADHGTSYERIKPEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGP 80 D+ A++G +Y R+KPEG+DT HG ILYLE+ITVSFDGFKAIN LNLDISVGELRCIIGP Sbjct: 20 DSEYAEYGVTYSRLKPEGLDTAHGVILYLEDITVSFDGFKAINKLNLDISVGELRCIIGP 79 Query: 81 NGAGKTTMMDVITGKTRPTSGTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVF 140 NGAGKTTMMDVITGKTRPTSGTAFFGQ+IDLTK+TEYEIAHAGIGRKFQRPTVFEQHTVF Sbjct: 80 NGAGKTTMMDVITGKTRPTSGTAFFGQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVF 139 Query: 141 ENLELAMKMDKRVKTTLFARLSSEQIGKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIG 200 ENLELAMKMDKRVKTTLFARL+SEQIGKIEEILKLIRL+GQE R+AGLLSHGQKQWLEIG Sbjct: 140 ENLELAMKMDKRVKTTLFARLNSEQIGKIEEILKLIRLNGQEHRIAGLLSHGQKQWLEIG 199 Query: 201 MLLMQEPQLLLLDEPVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVT 260 MLLMQEPQL+LLDEPVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQG KVT Sbjct: 200 MLLMQEPQLILLDEPVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVT 259 Query: 261 VLHEGSVLAEGNMRQVQSNERVIEVYLGR 289 VLHEGSVLAEG+M+QVQ++ERVIEVYLGR Sbjct: 260 VLHEGSVLAEGSMQQVQADERVIEVYLGR 288 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 147 bits (371), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 149/257 (57%), Gaps = 13/257 (5%) Query: 41 TTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTS 100 T A L L+ +T+ G A++N + + G++ +IGPNGAGKTT +VI+G +PTS Sbjct: 4 TNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTS 63 Query: 101 G-TAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKR------- 152 G FG D+T M +I+ G+ R FQR ++F TV EN+ A+ + + Sbjct: 64 GRVKLFGH--DITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQAL 121 Query: 153 VKTTLFARLSSEQIGKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLL 212 ++T F R ++ + ++L + LS + +A LS+G+++ L +G+ L +P++LLL Sbjct: 122 LRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLL 181 Query: 213 DEPVAGMSDAETARTAELLNEL-RGKHSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEG 271 DEP AG++ +ET E++ + + ++++VEHDM V I+ + VL+ G ++A G Sbjct: 182 DEPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISD--HIVVLNYGRLIATG 239 Query: 272 NMRQVQSNERVIEVYLG 288 + ++Q++ VI YLG Sbjct: 240 SPSEIQNDPEVIRAYLG 256 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 138/253 (54%), Gaps = 15/253 (5%) Query: 46 ILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFF 105 IL + ++ F G +A++++N+ I G++ +IGPNGAGKTT +VITG + +G+ F Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGS-FE 64 Query: 106 GQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLSSEQ 165 + +++A AGI R FQ +F + T EN+ + + R LF + + Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHV--RTHQGLFGAVFHHK 122 Query: 166 IGKIE---------EILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPV 216 + E E+L+ + ++ +R A LS+G ++ LEI L +PQLL LDEP Sbjct: 123 AARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPA 182 Query: 217 AGMSDAETARTAELLNELRGK-HSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQ 275 AGM+ E ELL +++ + +I+++EHD+ + + ++TVL G +AEG Sbjct: 183 AGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCD--RITVLDYGKPIAEGVPAD 240 Query: 276 VQSNERVIEVYLG 288 VQ + VIE YLG Sbjct: 241 VQKDPAVIEAYLG 253 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 5/244 (2%) Query: 47 LYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFFG 106 L L + F + I +L + G+ +IGPNGAGK+T+ ++I+G+ +SG Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 107 QTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLSSEQI 166 + + Y+I G+ R FQ +F + +VFENL A+ + + + RL+ Q Sbjct: 66 GS-SIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQD 124 Query: 167 --GKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAET 224 + E++++ I L + A LLS+ +++ LEIG+ + Q+LLLDEP AGMS +E+ Sbjct: 125 VNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSES 184 Query: 225 ARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQVQSNERVIE 284 EL+ ++ ++++VEHDM V +A ++ VL G ++A +++N V + Sbjct: 185 DAAVELIRKISAGKTLLMVEHDMDVVFGLAD--RIAVLVYGEIIACDTPDNIRNNPLVQQ 242 Query: 285 VYLG 288 YLG Sbjct: 243 AYLG 246 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 16/258 (6%) Query: 41 TTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTS 100 +T+ +L+ I+ + F A++N++L +S GE ++GPNGAGKTT+++V+TG +PT+ Sbjct: 2 STNDVLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 101 GTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFAR 160 G F ++ + ++A G+ R FQ ++F + TV E + ++ + F Sbjct: 62 GHVNF-DGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGH 120 Query: 161 LSSEQIGKIEEIL----KLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPV 216 L + KI +I+ LS G L HG+++ L++ P+++LLDEP Sbjct: 121 LFGSR--KINDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPT 178 Query: 217 AGMSDAETARTAELLNELR-GKH----SIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEG 271 AG+S A+ E L LR KH +IM+VEHDM V + ++ + G +A+ Sbjct: 179 AGVSTADKHGVMETL--LRAAKHMGIEAIMLVEHDMDLVSRYST--RIVAMQGGKKIADL 234 Query: 272 NMRQVQSNERVIEVYLGR 289 + +NE V+ + +G+ Sbjct: 235 PRDEFFANEEVVSIVVGK 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 637,294 Number of extensions: 25159 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 46 Length of query: 289 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 207 Effective length of database: 917,867 Effective search space: 189998469 Effective search space used: 189998469 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)