BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4608.p (376 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 645 0.0 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 82 4e-17 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 78 7e-16 gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 70 2e-13 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 70 3e-13 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/363 (89%), Positives = 345/363 (95%) Query: 3 TMIMRPSLFNRPAWTGIVVCTIVLALLPICNLLFPAGSALHVSSYTVALVGKFMCYAMAA 62 T I++PSLF+RPAW GIV C +VLALLPI NL FPA ALH+SSYT+ALVGKFMCYAMAA Sbjct: 2 TTILKPSLFSRPAWIGIVFCAVVLALLPIMNLCFPADHALHISSYTIALVGKFMCYAMAA 61 Query: 63 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHESVYQSDLPDFMVFLNWKAYPW 122 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMR+IG + VYQS+LPDFMVFLNWK YPW Sbjct: 62 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLPDFMVFLNWKEYPW 121 Query: 123 YWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT 182 YWWMT+HFWF+MLLVVLVPGLLAF+FGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT Sbjct: 122 YWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT 181 Query: 183 GFGGNNGFTDFKRILGFTITAPTTKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRD 242 GFGGNNGFTDFKRILGFTIT P+TKAVLYLVTLA L AL +CR IVTSKLGRVLQGVRD Sbjct: 182 GFGGNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFVCRAIVTSKLGRVLQGVRD 241 Query: 243 SESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV 302 SESRLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV Sbjct: 242 SESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV 301 Query: 303 GGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKR 362 GGRG+L+GPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFI VTLF+PQGILGLV+KFKK+ Sbjct: 302 GGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFIFVTLFMPQGILGLVKKFKKQ 361 Query: 363 DAA 365 +AA Sbjct: 362 EAA 364 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 92/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%) Query: 27 ALLPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALG 86 ALL + L+F ++L + + +G F+ +A L+ +++ G G+LS GH V+ LG Sbjct: 20 ALLVVAPLIFTQSASLSL----LCQMGTFIIFA---LSYNMLLGQGGMLSFGHAVYSGLG 72 Query: 87 GYAHGMYLMRAIGHESVYQSDLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAF 146 + + AI + +P + L+ LV G+ Sbjct: 73 AFCA----IHAINLVAAGNLHIP------------------------ITLIPLVGGVAGL 104 Query: 147 VFG-YFAF-RSRIKGVYFSIITQAM-TFAFMLLFFRNDTGFGGNNGFTDFKRILG---FT 200 FG F + +R G F++IT + F G FTD R++G F Sbjct: 105 FFGALFGYVTTRKSGTTFAMITLGIVELVFACSLMFPGFFGGEGGIFTD--RVVGEAFFG 162 Query: 201 ITAPTTKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLF 260 IT V YL+ LL + + T LGR++ VRD+ R F+GY+P W + Sbjct: 163 ITYGPQIQVYYLIAGWLLLSTVAMYAFTQT-PLGRIINAVRDNPERAEFVGYDPQWVRYL 221 Query: 261 VWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNG 320 LSA GI+GAL I++ +S S ++++ +GG GPI+GA V Sbjct: 222 TLMLSAFFAGISGALTAINFEIVSAENVSALRSGMILLFTFIGGTAFFFGPILGAI-VGV 280 Query: 321 LKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKK 361 + + + + W LG+ F+L+ + P GI GL+ +F + Sbjct: 281 FLTVVLSNYTNAWQLYLGVFFVLIVMLAPGGIAGLLMQFMR 321 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 145/331 (43%), Gaps = 22/331 (6%) Query: 47 YTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHESVYQS 106 Y +++V + +AA++L+L+ GYTG LSLGH FF LG Y + ++G + Sbjct: 25 YLLSVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLL---SLGFDVTLWG 81 Query: 107 DLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIIT 166 +V A P W S + + ++ G AFR ++G YF I+T Sbjct: 82 MTEPLVV----TAKP--------VWVSFACGIAFAAIAGWLLGKLAFR--VRGAYFVIVT 127 Query: 167 ----QAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPTTKAVLYLVTLALLFGAL 222 Q M + + NN + G + +K Y + LA+ + Sbjct: 128 ISFAQVMRMVSLNWVDLTEGPMALNNIPALTMWVPGEGVIDLASKLSTYWLVLAVAVVSY 187 Query: 223 VLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGI 282 +L IV S++GR + +R++E+ +G + +A I G AG LY V I Sbjct: 188 LLVAAIVHSRIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHTVRI 247 Query: 283 INPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFTAAF-PDLWLYALGLIF 341 I+P +I MVI VGG+GTL GP++G L P++ G++ Sbjct: 248 IDPDVFMFMFTIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSPEIQWMIYGVLM 307 Query: 342 ILVTLFLPQGILGLVQKFKKRDAAPAEGNAS 372 I V +F+P+G++ +R +A + + Sbjct: 308 IAVLVFMPKGVVPSAGNLLRRYSAKSMSEQT 338 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 150/361 (41%), Gaps = 50/361 (13%) Query: 56 MCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMR--AIGHESVYQSDLPDFMV 113 + Y M AL L++V G+ G+L LG+ F+A+G Y + A+ ES + + P Sbjct: 47 LLYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLES-FVNQYPAIGE 105 Query: 114 FLNWKAYPWYWWMTDHF--WFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTF 171 L W P H W + L LV G + G A +++G Y +I+T + F Sbjct: 106 TLLWVFGPEIAQNGIHLSLWAIVPLAALVAGFFGALLG--APTLKLRGDYLAIVT--LGF 161 Query: 172 AFMLLFFRND--------TGFGGNNGFTDFKRILGFTITAPT-TKAVLYLVTLAL----- 217 ++ F N+ G G N D RI G ++ ++A + + A+ Sbjct: 162 GEIIRIFMNNLNGPVNITNGPQGIN-MIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNA 220 Query: 218 -LFGALVLCRMIV-------TSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVIC 269 F L LC I+ S+LGR +R+ E +G N KL + + A Sbjct: 221 YYFLFLFLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFG 280 Query: 270 GIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGL-------- 321 GIAGA++ G ++P S SI ++ +GG G + G ++G + L Sbjct: 281 GIAGAMFASFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVV 340 Query: 322 ----KSWFTAAFPD---LWLYALGLIFILVTLFLPQGILGLVQKFKKRDAAPAEGNASKE 374 +S F D L GL +L+ L+ P GL K D A+ + +K+ Sbjct: 341 EPLQQSLFGEVLIDAEVLRQLLYGLAMVLIMLYRPS---GLWPSPKSEDRPTADNDTAKK 397 Query: 375 A 375 + Sbjct: 398 S 398 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 146/347 (42%), Gaps = 50/347 (14%) Query: 24 IVLALLPICNLLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFF 83 +V+ALL I L VS Y + L+ F YA+ L +L++GY G+LS GH +F Sbjct: 35 VVVALLAIAPLF--------VSQYYMTLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFI 86 Query: 84 ALGGYAHGMYLMRAIGHESVYQSDLPDFMVFLNWKAYPWYWWMTDHFWFSMLLVVLVPGL 143 A+G YA + + T F M+L+ V Sbjct: 87 AIGAYAAAAMVAK------------------------------TGMISFEMMLLTAVVAS 116 Query: 144 LAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGF--GGNNGFTDFKRIL---- 197 SR G++F ++T ++F + F N + GG++G + L Sbjct: 117 FIISIPIAWLASRFTGIFFGMLT--LSFGMLFHSFLNKFYYITGGDSGMRVPRPSLFGME 174 Query: 198 --GFTITAPTTKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPL 255 F TA Y + +L V+ R IV S G L RD+ + +++G Sbjct: 175 LDQFDKTAFLGGPFYYYCLVMVLLLTWVMWR-IVRSPYGIHLMASRDNAIKALYLGVKIR 233 Query: 256 WFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGA 315 + + +SAV I G + G+ +P +S +V A +GG +GP++GA Sbjct: 234 SVRAIAFVVSAVYASIGGVILGVNTGLADPELAYWTHSGHLVFMAVLGGYQEFLGPVLGA 293 Query: 316 FTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKR 362 F L+ + + W + LG I ++ + LP GI+G ++KFK + Sbjct: 294 FVFILLQDELS-SLTQYWRFFLGAILAILVVVLPGGIMGAIRKFKSK 339 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.331 0.144 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 870,075 Number of extensions: 37186 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 7 Length of query: 376 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 291 Effective length of database: 906,776 Effective search space: 263871816 Effective search space used: 263871816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)