BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4607.p (538 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 901 0.0 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 104 1e-23 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 101 1e-22 gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t... 89 8e-19 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 88 2e-18 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/529 (86%), Positives = 489/529 (92%), Gaps = 1/529 (0%) Query: 10 GLLATWLCAHALGAFAAIDPALLKPLGGDDPDARIDAVNQIAALANEDALKILNALNSDA 69 G+L+ WLC A+ A AAIDPALLKPL GDDPDARI AV +IAALAN+DA KIL A+N+DA Sbjct: 11 GMLSLWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTEIAALANQDAQKILQAINNDA 70 Query: 70 LYVTPAGEVLIVDDSGKAFNPATDQSGPAPDDAEGITVNNRLRGAVEGALSGLKLLSPQR 129 LY TPAG+V I+D S AFNPATD++GPAPDDAEGITVNNRLRGAVEGALSGL+L + R Sbjct: 71 LYATPAGDVFIIDGS-DAFNPATDKTGPAPDDAEGITVNNRLRGAVEGALSGLQLFAQDR 129 Query: 130 DERLAAANDLLKNADPAQIPLIVKALAKESDPQIKDVLQQVQATANLHSPDPAARRAAVK 189 + RL AANDLLK ADPAQIPLI KAL KESDP I+++LQQV ATANLH+PD A R+AAVK Sbjct: 130 NARLTAANDLLKTADPAQIPLINKALEKESDPAIRELLQQVVATANLHAPDAATRQAAVK 189 Query: 190 TLADTTNASLKPALENMLAKNPDGSYVEPDEGVRVEAVRTLAALDRHLAIVDFAGKLFYG 249 TLA+T+NASLKP LE MLAKNPDGSYVEPD GVR EAV TL+AL+RHL I +F GKLFYG Sbjct: 190 TLANTSNASLKPILEQMLAKNPDGSYVEPDAGVRSEAVNTLSALNRHLTITEFVGKLFYG 249 Query: 250 ISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVV 309 ISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP AIDAYL+V Sbjct: 250 ISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAIDAYLLV 309 Query: 310 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQCVRSIFGAQNVEVANP 369 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISL+LMQ VRSIFGAQNVEVANP Sbjct: 310 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLILMQGVRSIFGAQNVEVANP 369 Query: 370 SWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVG 429 SWMSGGVTVLGSLVLSYNRIVI+FFALFVV AVWLILNKTRLGLFVRAV QNRRMA CVG Sbjct: 370 SWMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMAACVG 429 Query: 430 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI 489 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI Sbjct: 430 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI 489 Query: 490 AAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 AAFGLGEVNKFLEP+AGAVLAKIAILVFII+FIQKRPQGLFALKGRSVE Sbjct: 490 AAFGLGEVNKFLEPVAGAVLAKIAILVFIIIFIQKRPQGLFALKGRSVE 538 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 148/289 (51%), Gaps = 19/289 (6%) Query: 252 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVAL 311 LGS L +GL + FG+M ++N AHGEL +GAY Y +F F G+ L Sbjct: 14 LGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFGS--------L 65 Query: 312 PAAFIVAAAVGIALERLVIRWLYGRPL----ETLLCTWGISLMLMQCVRSIFGAQNVEVA 367 A IV G A+E ++R R L E +L G+ +++ ++G V + Sbjct: 66 IVAAIVGFLFGTAIEYFLLRR---RDLKAIDEVMLIMIGVMIIMQNAELLMWG--GVAKS 120 Query: 368 NPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADC 427 PS S V G++ +S R+ ++ AL ++ +L++ ++RLGL +RA Q++ A Sbjct: 121 VPSPFSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAKI 180 Query: 428 VGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGT 487 VGV+ + +TF LG +A + G L+ + V P +G + +F +V+LGG+G L G Sbjct: 181 VGVNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPGA 240 Query: 488 VIAAFGLGEVNKF-LEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGR 535 + F L V +F ++ A + LV + V I RPQGLF ++ R Sbjct: 241 ALGGFILAIVEEFGAGYISTAYRDALGFLVILAVMI-FRPQGLFTIRER 288 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 12/293 (4%) Query: 242 FAGKLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYT-TYVCQLVFRKFFP 300 F L GI +VL L A GL + FG+ IIN+A G + +GAY +V K P Sbjct: 4 FFNILLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLP 63 Query: 301 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLE-TLLCTWGISLMLMQCVRSIF 359 + ++ L A IV +GI LERL IR +Y RP LL T+ + LM +R + Sbjct: 64 VHLFPFV---LLGAGIVIGLIGIPLERL-IRTIYNRPESFQLLLTFAVMLMFQDVLRFFW 119 Query: 360 GAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWL--ILNKTRLGLFVRA 417 GA ++ N S G ++ G + +YN +VI A+ V A+ + L KT+ G +RA Sbjct: 120 GADPQQLPNVSMTFGTMSAFGVSMPTYNVMVI---AVAVTLAIGMAYFLGKTKTGKILRA 176 Query: 418 VTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVV 477 +NR + +G++ ++ +M F LG + +GG + ++G +V++F VVV Sbjct: 177 TAENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVV 236 Query: 478 LGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLF 530 +GG+G + G + A +G + L M +AI ++ + +P GL+ Sbjct: 237 IGGLGSMKGAAVGALIVGLIRA-LSAMYYPEAEILAIYAIVLAVLIWKPAGLY 288 >gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 147/301 (48%), Gaps = 17/301 (5%) Query: 246 LFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDA 305 +F G+ LG + + A+G + FG++ +I +HG+ LM+GA+ + Sbjct: 8 VFNGLMLGMIYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDISSPWI 67 Query: 306 YLVVALPAAFIVAAAVGIALERLVIRWLY-GRPLETLLCTWGISLMLMQCVRSIFGAQNV 364 L+ + +A V +G A+ + +I L+ PL TLL T + ++ + VR + + Sbjct: 68 RLLAVVLSAVCVTGLLGAAIAKFLILPLHKAPPLNTLLATLMLGTVMRESVRLFYPDGSN 127 Query: 365 EVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRM 424 PS + G +G+L L + ++++ L ++ V ++ +TRLG+ +RAV Q+ Sbjct: 128 SKPFPSLLPTGSVDIGTLALRADNVILLISGLAIIAGVHFLITRTRLGMAIRAVAQDGET 187 Query: 425 ADCVGVSTGKIDMMTFGLGCGIAGLGGVA----LSQLG-NVGPDLGQGYIVDSFMVVVLG 479 A +G++ + ++TF LG G+A L GV +++ NVG LG V F +LG Sbjct: 188 ARLMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLG----VIGFSAAILG 243 Query: 480 GVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIA-----ILVF--IIVFIQKRPQGLFAL 532 G+G + G ++ F + + A++ I + F +I+ + +P GL A Sbjct: 244 GLGNIYGAILGGFLFAALQVLGSALLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAE 303 Query: 533 K 533 K Sbjct: 304 K 304 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 13/206 (6%) Query: 249 GISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLV 308 G+S G +L + + GL + F +MG++N AH MIGAY Y F+P + A L Sbjct: 11 GLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISNAI-GFWPALVLAPLA 69 Query: 309 VALPAAFIVAAAVGIALERLVIRWL--YGRPLETLLCTWGISLMLMQCVRSIFGAQNVEV 366 V L A + ER +R + YG+ + LL T+G+S ++++ V+ I+G V Sbjct: 70 VGLLGALV---------ERFGLRAVHKYGK-IPELLFTFGLSYVIVELVQLIWGRVAVPY 119 Query: 367 ANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMAD 426 + P + G + L + R ++ A+ ++ A++ L +TR+GL ++A + +M + Sbjct: 120 SIPPELQGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVE 179 Query: 427 CVGVSTGKIDMMTFGLGCGIAGLGGV 452 +G + ++ M F GC +AGL GV Sbjct: 180 ALGHNVPRVFMWVFAGGCALAGLAGV 205 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,028,836 Number of extensions: 36303 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 6 Length of query: 538 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 450 Effective length of database: 895,685 Effective search space: 403058250 Effective search space used: 403058250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)