BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4606.p
         (417 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980511|ref|YP_001353496.1| branched-chain amino acid trans...   819   0.0  
gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a...    66   3e-12
gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a...    65   8e-12

>gi|152980511|ref|YP_001353496.1| branched-chain amino acid
           transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/416 (95%), Positives = 402/416 (96%)

Query: 1   MSRRTVLKATALGAFALAASSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60
           MSRR +LKATALGAF LA SSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTID
Sbjct: 1   MSRRNILKATALGAFTLATSSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60

Query: 61  EINAAGGVMGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120
           EINA GGVMGKKLE V+VDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK
Sbjct: 61  EINANGGVMGKKLEAVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120

Query: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP 180
           ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPA EYLMSKEGGGAKRFVLLGTDYVYP
Sbjct: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPATEYLMSKEGGGAKRFVLLGTDYVYP 180

Query: 181 RTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240
           RTTNKILRAFLHSKGV+DSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN
Sbjct: 181 RTTNKILRAFLHSKGVRDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240

Query: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNAAFIK 300
           VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNA FIK
Sbjct: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNAGFIK 300

Query: 301 KWKAYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMAGQTFKAP 360
           KWK YA AK LPNA TVVTNDPMEATYVG++MW QAVEKAKSTDTDKVIAAMAGQTFKAP
Sbjct: 301 KWKDYAVAKKLPNAKTVVTNDPMEATYVGLYMWKQAVEKAKSTDTDKVIAAMAGQTFKAP 360

Query: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQK 416
           SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVV KTKTTIRAQPWSPYIPGNE KQK
Sbjct: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVNKTKTTIRAQPWSPYIPGNEGKQK 416


>gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 431

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 15/259 (5%)

Query: 1   MSRRTVLKATALG-AFALAASSWLPSAFAADTIKVGILHSLSGTMA-ISETSLKDVALMT 58
           + RRTVLKA  +G A  L     +P+      ++VGI+    G    I E  L+ V   T
Sbjct: 13  IQRRTVLKAAGVGVATGLLG---MPAFAQNKPLRVGIIAPRGGVAGTIGECGLRGVEWTT 69

Query: 59  IDEINAAGGVMGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPV 118
              INAAGG+ G+K+E V+ +  S      ++ R+L+ Q+KV  V G  +S    ++ P 
Sbjct: 70  A-RINAAGGIGGRKVELVIQEETSPKDTI-DRFRKLVLQEKVDCVQGIVSSGVSLALAPA 127

Query: 119 FKE--LNSLLFYPVQYEG--EELEKNVFYTGAAPNQ-QAIPAVEYLMSKEGGGAKRFVLL 173
            ++  + ++ +     +G  E + K  +   +  N+ +A+ A    +    G  KR   +
Sbjct: 128 AEDSRMPTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACV 187

Query: 174 GTDYVYPRTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVIS 233
             DY Y R T    +A L   G++   + E ++  G+ D   + +N+    A     + S
Sbjct: 188 NPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLD---LTSNVAALKAAKPDLIFS 244

Query: 234 TINGDSNVPFYKELGNAGL 252
           ++       F K+  NAGL
Sbjct: 245 SLLFADLPVFMKQAHNAGL 263


>gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 9   ATALGAFALAASSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTIDEINAAGGV 68
           A  +G    AA+S    A+A +TIK+G+   L+G +A + T + + A +  D +N  GGV
Sbjct: 10  AACIGLAMFAATS----AYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGV 65

Query: 69  MGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFKE 121
           +GKK++ V+ D  SN         +LI +DKV V+ G W+S    +++P   E
Sbjct: 66  LGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIE 118


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 962,253
Number of extensions: 40203
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 417
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 331
Effective length of database: 903,079
Effective search space: 298919149
Effective search space used: 298919149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)