BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4601.p (231 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 68 6e-13 gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 60 1e-10 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 67.8 bits (164), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 24/220 (10%) Query: 8 AQTLQRQILS----GTYAPGAMLPSQRELAESMGISRASLREALSMLEALGFIRSVPGKG 63 ++TL+ QI GT PG L + LAE G+SR +REAL L ++G + P +G Sbjct: 15 SETLREQIEEMIAVGTLKPGQHL-DETVLAERFGVSRTPIREALIQLASMGIVVIRPRRG 73 Query: 64 TLVSERQEGRVAPPQPPAGEGGTSATALDLAAVFQLRYTLESAAAALAARHISAHATPRL 123 +V+E + P Q L +F++ LE+ A LAAR +S L Sbjct: 74 AIVAE-----IGPQQ--------------LIEMFEVMAELEAMCARLAARRMSPAEHAIL 114 Query: 124 WGIQARFEDALKNLDLVSASHADLEFHQLVAELSGNPAFSQVVRQFERPISHSLRVPFAD 183 + A + D + + + EFHQ + S N + R +R + R+ Sbjct: 115 MATHLACKQARDDADSDAYFYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRV 174 Query: 184 RERIWAPAIEHRAIAAAISAGDIEAARLAMQQHIVNAAQR 223 R R+ A EH A+ AI G + A ++QHI+ QR Sbjct: 175 RNRVTASFDEHGAVVDAIIEGKGDLAAELLRQHIMIQGQR 214 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 26/217 (11%) Query: 11 LQRQILSGTYAPGAMLPSQRELAESMGISRASLREALSMLEALGFIRSVPGKGTLVSERQ 70 LQR I+ G PG L ++RE+ E +GISR LREA+ +L + G I VP +G VS+ Sbjct: 33 LQRLIIEGVLTPGMKL-NEREVCERLGISRTPLREAMKVLASEGLIDIVPNRGAFVSKMN 91 Query: 71 EGRVAPPQPPAGEGGTSATALDLAAVFQLRYTLESAAAALAARHISAHATPRLWGIQARF 130 + ++ F++ LE+ + LAA IS + + Sbjct: 92 DT-------------------EIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAM 132 Query: 131 EDALKNLDLVSASHADLEFHQLVAELSGNPAFSQVVRQFERPISHSLRVPFADRERIWAP 190 DL + H + E + N Q+ R + +LR +E W Sbjct: 133 LVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSVNRRLL-ALRFKSNFKEEKWDR 191 Query: 191 AI-EHRAIAAAISAGDIEAARLA--MQQHIVNAAQRV 224 AI EH + A+ A D RLA ++QH+++ V Sbjct: 192 AINEHDEMIQALEARD--GKRLAGILRQHLLDKRDSV 226 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 427,040 Number of extensions: 13765 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 3 Length of query: 231 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 151 Effective length of database: 925,261 Effective search space: 139714411 Effective search space used: 139714411 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)