BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4600.p (550 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 513 e-146 gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 124 2e-29 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 91 3e-19 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 513 bits (1320), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/527 (49%), Positives = 342/527 (64%), Gaps = 17/527 (3%) Query: 25 AHAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPMYDGLTQWNLSKADKASELIADLA 84 HAE V R ++ DIP T GQPD+G +FTG +YD L W + + +LI LA Sbjct: 24 VHAETVARYGISMADIPLTTGQPDRGAGAYQFTGHTIYDPLIAWEANIGTRPGKLIPGLA 83 Query: 85 LSWQVEPKDKTKWIFKLRPGVKFHDGSPFNADAVVWNVNKVLDKNAVQFDPSQVGVTASR 144 W+V+PKD+ KW+F LR GVKFHDGS F ADAVVWN++KVL+ + QFD Q R Sbjct: 84 TEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADAVVWNLDKVLNDKSPQFDAKQSAQVRPR 143 Query: 145 MPTLRSARKIDDLTVELTTSEPDSFLPINLTNLFMASPSQWEKKLAAVPASVTDKAERSK 204 +P++ S RK++D VE+TT E D+ P L ++SP+QWEK Sbjct: 144 IPSIVSYRKVNDYAVEITTKEIDALFPYQLPWFLISSPAQWEK---------------VG 188 Query: 205 QAWAAFAADASGTGPFKMAKFVPRERLEVVKNDGYWDPARRPKIDRVVMLPLPEANSRTA 264 + W FA+ ASGTGPFK+ K VPRER E+VKN GYWD +R + DRV++LP+P+A +R Sbjct: 189 RDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILLPIPDALTRAN 248 Query: 265 ALMSGQVDWIEAPAPDALDAIKARGFKIYSNPQPHVWPWQLSFLPGSPWLDKRVRHAANL 324 AL++GQVD IE P PD L +K+ GFK+ +N PHVWP+ S PGSPW D RVR AANL Sbjct: 249 ALLNGQVDIIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHFSTQPGSPWTDIRVRKAANL 308 Query: 325 CVNRPAMKQLLGGLMGEATGTVEPGHPWRGNPSFQIKYDPAAAKKLMTEAGYSAAKPLTV 384 V+R + L+ GL A G ++P PW G P+F+IKYD AAA+ LM +AGYS +KPL Sbjct: 309 AVDRSGIVALMNGLAVPAYGQLDPTSPWFGKPTFKIKYDLAAARALMAQAGYSPSKPLKA 368 Query: 385 KVQISASGSGQMQPLPMNEFMQQNLKECFFDVQFDVIEWNTLYTNWRIGAKDP--SAHGA 442 K+ I+ G+GQM LPMNE++QQ+L E VQF+V+E TLY +WR GAK + G Sbjct: 369 KIVIAQGGTGQMLSLPMNEYIQQSLAEIGIQVQFEVVELETLYLHWRSGAKGDINAGKGI 428 Query: 443 NAINVSFASMDPFFAMVRFVDTKAAPPTSNNWGFYSNPEVDALIAKARTTFDPKQRDALL 502 AIN+ + + DPF+A+ RF D++ P NWG +SNP+VDA + + RTTFD K +D LL Sbjct: 429 TAINLGYVTADPFYALTRFADSRYVAPNGVNWGGWSNPKVDAELDQIRTTFDVKAQDKLL 488 Query: 503 AQLHAKIVDEAPFVWVAHDTGPRAISAKVKGVVQPQSWFIDIATMHM 549 AQ+H +VD+A +WV HD P IS KVKG +Q Q WF D+ T+ M Sbjct: 489 AQVHQAMVDDALMLWVVHDVNPHVISPKVKGFIQAQHWFQDLTTIRM 535 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 130/488 (26%), Positives = 207/488 (42%), Gaps = 67/488 (13%) Query: 70 LSKADKASELIADLALSWQVEPKDKTKWIFKLRPGVKFHDGSPFNADAVVWNVNKVLDKN 129 L D +L+ LA SW+ D T W FKLR VKFHDGS F A+ VV+++++ Sbjct: 60 LVNVDANGKLVPGLATSWRAV--DATTWEFKLRHDVKFHDGSKFTAEDVVFSLDR----- 112 Query: 130 AVQFDPSQV----GVTASRMPTLRSARKIDDLTVELTTSEPDSFLPINLTNLFMASPSQW 185 P+++ G + + + + +D TV L+T+ P L ++++ +F+ S Sbjct: 113 -----PAKLTNSPGPYTAYTKQIIAKKIVDPYTVRLSTATPYGPLALDVSAIFIVS---- 163 Query: 186 EKKLAAVPASVTDKAERSKQAWAAFAADASGTGPFKMAKFVPRERLEVVKNDGYWDPARR 245 K AA AS D S +A GTGP+K F +R+EV +N+ YW + Sbjct: 164 --KKAAEKASTED--FNSGKALI-------GTGPYKFVSFKRGDRIEVARNEQYW--GGK 210 Query: 246 PKIDRVVMLPLPEANSRTAALMSGQVDWIEAPAPDALDAIKARG-FKIYSNPQPHVWPWQ 304 D+V + + R AAL+SG VD IE L +K FK+ W+ Sbjct: 211 SDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPTADLSKLKGNAKFKLEQKISWRTIFWE 270 Query: 305 LSF---------------LPGSPWLDKRVRHAANLCVNRPAM-KQLLGGLMGEATGTVEP 348 + LP +P D RVR A + +NR A+ + + GL A+ V P Sbjct: 271 IDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAISKAINRQALVDRTMEGLAVPASNIVAP 330 Query: 349 GHPWRGNPSFQIKYDPAAAKKLMTEAGYSAAKPLTVKVQISASGSGQMQPLPMNEFMQQN 408 G + YDP AKKL+ EAGY LT + + + + + Q Sbjct: 331 GLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFVLT----LHGPNDRYINDAQVVQTVAQF 386 Query: 409 LKECFFDVQFDVIEWNTLYTNWRIGAKDPSAHGANAINVSFASMDPFFAMVRFVDTKAAP 468 L + + + + ++ R G + G + ++ F + V T + Sbjct: 387 LNRIGIQTKVETLPLSVYFSKARAGEFSVALLG-------WGTLAGDFGLRTLVGT--SN 437 Query: 469 PTSN----NWGFYSNPEVDALIAKARTTFDPKQRDALLAQLHAKIVDEAPFVWVAHDTGP 524 P NWG YSNP +D LIA + + D +R+ + A + + V + H Sbjct: 438 PDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKREGYAKEAAAVAMKDYAVVPLHHQYAT 497 Query: 525 RAISAKVK 532 A+ +K Sbjct: 498 WAMRKGLK 505 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 128/501 (25%), Positives = 216/501 (43%), Gaps = 61/501 (12%) Query: 58 GIPMYDGLTQWNLSKADKASELIADLALSWQVEPKDKTKWIFKLRPGVKFHDGSPFNADA 117 G +YDGL D+ + LA SW++ P KT + F LR V F DG FNA+A Sbjct: 103 GRILYDGLVY-----QDEQGNISPWLAKSWEISPDGKT-YTFHLRDDVTFSDGVRFNAEA 156 Query: 118 VVWNVNKVLDKNAVQFDPSQVGVTASRMPTLRSARKIDDLTVELTTSEPDS-FLPINLTN 176 V N+ + D S + R P LR R +D+ T E T SEP S FL + + Sbjct: 157 VQVNLEHMRDPAT----KSPLAAAYIR-PYLR-GRIVDEYTFEATLSEPYSPFLDVLAQS 210 Query: 177 -LFMASPSQWEKKLAAVPASVTDKAERSKQAWAAFAADASGTGPFKMAKFVPRERLEVVK 235 L M SP Q + P S+ A G+GPF + +V + VK Sbjct: 211 WLSMISPKQIREN----PKSI--------------AEHPIGSGPFVLESYVRAQGANFVK 252 Query: 236 NDGY-WD-PARRPK----IDRVVMLPLPEANSRTAALMSGQVDW-IEAPAPDALDAIKAR 288 Y W P R K +DR+ + +PEA R ++L S Q D+ ++APA +A AI+A Sbjct: 253 RADYNWAPPVVRHKGPAYLDRIELTFVPEAMIRYSSLQSAQSDFTLDAPAQNA-QAIRAD 311 Query: 289 -GFKIYSNPQPHVWPWQLSF-LPGSPWLDKRVRHAANLCVNRPAMKQLLGGLMGEATGTV 346 + +S + L+ + +P+ D ++R A L ++R + + G E Sbjct: 312 PALRFHSRVRKGNPFRSLTLNVEKAPFNDVQIRKALALAIDREGVAWITGFGEYEPKSDF 371 Query: 347 EPGHPWRGNPSFQ--IKYDPAAAKKLMTEAGYSA----------AKPLTVKVQISASGSG 394 + +PSF+ + Y+ A A +L +AG++ K L+ V I+ + + Sbjct: 372 LAANSRYYDPSFKNALTYNVAEANRLFDQAGWTTRDDKGYRTKDGKRLSATVLITENPAF 431 Query: 395 QMQPLPMNEFMQQNLKECFFDVQFDVIEWNTLYTNWRIGAKDPSAHGANAINVSFASMDP 454 P + +Q + ++ F++ +++ + +G D A G + + + D Sbjct: 432 ---PNSVAVAIQADARKVGFELNIELLPLAVITDRRYVG--DYQALGGGYWHTN--TPDG 484 Query: 455 FFAMVRFVDTKAAPPTSNNWGFYSNPEVDALIAKARTTFDPKQRDALLAQLHAKIVDEAP 514 + + + N + E+D ++ +AR + DP + AL +Q ++ + P Sbjct: 485 LYILYHSNSIASEKLIGQNSSRLRDAELDDVLERARKSNDPVELKALYSQAQRRLTEVVP 544 Query: 515 FVWVAHDTGPRAISAKVKGVV 535 + A + VKGVV Sbjct: 545 AIPSYESIHMIAYRSYVKGVV 565 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,352,297 Number of extensions: 56653 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 3 Length of query: 550 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 462 Effective length of database: 895,685 Effective search space: 413806470 Effective search space used: 413806470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)