BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4599.p (317 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 395 e-111 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 150 7e-38 gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 149 3e-37 gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 94 1e-20 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/316 (62%), Positives = 248/316 (78%) Query: 1 MIAYLIRRLLYALPIMLGVAFLCFMLVHIAPGDPLVSILPPDASADLQKQLMELYGFNRS 60 M +Y+++RLLYA+PI L V L FMLV++APGDPL +I P DA AD+ L YG ++ Sbjct: 1 MFSYILKRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPADVIAALKSAYGLDKP 60 Query: 61 YPEQFLSWVWRALHGDLGSSIATGRPVAAEVFKAVGNTFMLAAVATVIGFVFGSLFGFVA 120 P Q+ W+ RA+ GDLG+SIA+GR V EV AV NT +LA VA IG +FG + G +A Sbjct: 61 VPVQYGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTLLLAGVAGFIGVLFGCVLGALA 120 Query: 121 GYFRNSWVDRIASFISVVGVSVPHYWLGMVLVIVFSSKLMWLPATGAGPDGSGAWVWDIE 180 GY+ W+DRIA+F+SV+GVSVPHYWLG+VL I+FS L W PA GAGP GS W+WD + Sbjct: 121 GYWHGGWIDRIATFLSVIGVSVPHYWLGLVLTIIFSIWLGWFPAMGAGPGGSSEWLWDYD 180 Query: 181 HMKYLLMPAVTMSFIPMGIIARTVRALVADILAQEFVVGLKARGLSDAGVLRHVVKNAAP 240 H+++L++PA+T++ IPMGII RTVRALVAD+L QEFV+ L+ARGLS+ + RH+ KN AP Sbjct: 181 HIRHLVLPAITLAVIPMGIITRTVRALVADMLEQEFVIALRARGLSNRAIFRHIAKNTAP 240 Query: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGSILVLAMFFVALN 300 T LAV GLQ+GYL+GGSIL+ETVF+WPGTGFLLN AIFQRD+PLLQG+ILVL MFFV LN Sbjct: 241 TVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDMPLLQGTILVLCMFFVGLN 300 Query: 301 LLVDILQTIFDPRIER 316 L+VDILQ + DPR+ R Sbjct: 301 LIVDILQPLLDPRMGR 316 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 150 bits (380), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 170/312 (54%), Gaps = 17/312 (5%) Query: 8 RLLYALPIMLGVAFLCFMLVHIAPGDPLVSILP-PDA--SADLQKQLMELYGFNRSYPEQ 64 RLL L ++ G A L F+ ++I GD ++I+ PDA +A++ Q+ + YG + Q Sbjct: 10 RLLAGLGVLWGAATLTFIAINITAGDTALAIVGGPDAMPTAEVLAQVRKEYGLDDPLLTQ 69 Query: 65 FLSWVWRALHGDLGSSIATGRPVAAEVFKAVGNTFMLAAVATVIGFVFGSLFGFVAGYFR 124 + +++ R GDLG S PV V + +G T LA A V+ V + + R Sbjct: 70 YGNYIARLAKGDLGESYRLRIPVLKAVTQQLGATVQLALSAGVLSIVLSVVIALLTAR-R 128 Query: 125 NSWVDRIASFISVVGVSVPHYWLGMVLVIVFSSKLMWLPATGAGPDGSGAWVWDIEHMKY 184 W+ I S + S P + +G++L++VFS W PA+G S W + Sbjct: 129 APWIRSIVSGAELTITSAPSFVIGILLLLVFSFYFHWFPASG-----SQGW-------RA 176 Query: 185 LLMPAVTMSFIPMGIIARTVRALVADILAQEFVVGLKARGLSDAGV-LRHVVKNAAPTAL 243 L++P + ++ G++ + +R + D+L Q F++ +ARG+SDAGV LRH +++A + Sbjct: 177 LVLPTIALALPVAGVLTQVLRQALEDVLEQPFILTARARGMSDAGVRLRHALRHALVPLV 236 Query: 244 AVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGSILVLAMFFVALNLLV 303 + G LLGG++++E +F+ G G L+ A +D+P++ G L+ A +V +N++V Sbjct: 237 TLSGFVFASLLGGAVVVEMLFARQGVGRLMLDAANTKDVPIVLGITLLAAFIYVIVNIVV 296 Query: 304 DILQTIFDPRIE 315 D+L ++ DPR+ Sbjct: 297 DVLYSLIDPRVR 308 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 186/324 (57%), Gaps = 14/324 (4%) Query: 1 MIAYLIRRLLYALPIMLGVAFLCFMLVHIAPGDPLVSILPPDASADLQKQLMELYGFNRS 60 M+ +++RRL ++ ++ ++ L F+ V+ A G+P+ +L PDA + + + +G ++ Sbjct: 1 MLDFILRRLGQSVLVLAVMSLLVFIGVY-AIGNPIDILLSPDADQFERARTIAAFGLDKP 59 Query: 61 YPEQFLSWVWRALHGDLGSSIATGRPVAAEVFKAVGNTFMLAAVATVIGFVFGSLFGFVA 120 +Q+ ++ A+ GDLG S A G + + + T LA A +I V G G A Sbjct: 60 LWQQYFIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISAILISIVLGIPLGLWA 119 Query: 121 GYFRNSWVDRIASFISVVGVSVPHYWLGMVLVIVFSSKLMWLPATGAG--------PDGS 172 G +SW+ + +S++G S+P +W+G++L++VF+ +L WLPA+G G P Sbjct: 120 GLRPHSWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPASGRGETTLLLGIPVSF 179 Query: 173 GAWVWDIEHMKYLLMPAVTMSFIPMGIIARTVRALVADILAQEFVVGLKARGLSDAGVLR 232 +W + +K+LL+P++ ++ + ++ R RA + L Q++V +A+GL ++ ++ Sbjct: 180 LSW----DGLKHLLLPSLNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLRNSRIIG 235 Query: 233 -HVVKNAAPTALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGSILV 291 HV+KN + V+ LQ G ++ +I+ E+VF+WPG G L+ +I D P++ +++ Sbjct: 236 VHVLKNILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVAYLML 295 Query: 292 LAMFFVALNLLVDILQTIFDPRIE 315 + F+ +NL+VD+ ++ DPR+ Sbjct: 296 IVALFILINLIVDVAYSLLDPRVR 319 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/356 (23%), Positives = 160/356 (44%), Gaps = 55/356 (15%) Query: 3 AYLIRRLLYALPIMLGVAFLCFMLVHIAPGDPLVSIL----------------------- 39 +Y+I+R+L LP +LGV + F ++ PG P+ L Sbjct: 5 SYIIKRVLLMLPTLLGVIAITFAVIQFVPGGPVEQALVELKGQFGAGGEAGGGGGSSQYR 64 Query: 40 -PPDASADLQKQLMELYGFNRSYPEQFLSWVWRALHG----DLGSSIATGRPVAAEVFKA 94 A+ ++ LYGF++ E+F W+ L G DLG S + V V Sbjct: 65 GRQGIDAERVAEIKALYGFDKPPVERF----WQMLKGFATFDLGQSFYHHKDVWDLVVSK 120 Query: 95 VGNTFMLAAVATVIGFVFGSLFGFVAGYFRNSWVDRIASFISVVGVSVPHYWLGMVLVIV 154 + + L + + G S D +++ + ++G S+P + LG+ L+++ Sbjct: 121 LPVSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVM 180 Query: 155 FS--SKLMWLPATGAGPDGSGAWVWD--------IEHMKYLLMP---AVTMSFIPMGIIA 201 F S + W G D W+ ++++ ++ +P +V SF M ++ Sbjct: 181 FGGGSFVQWFSLRGLTSDN-----WEQLSLLGKVLDYLWHIALPVTASVAGSFAMMTMLT 235 Query: 202 RTVRALVADILAQEFVVGLKARGLSDAGVL-RHVVKNA-APTALAVMGLQLGYLLGGSIL 259 + + + +++V+ +A+GLS+ VL +HV +NA P +G GS+L Sbjct: 236 KNT---FLEEIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLL 292 Query: 260 IETVFSWPGTGFLLNQAIFQRDLPLLQGSILVLAMFFVALNLLVDILQTIFDPRIE 315 IET+FS G G L +++ +RD P++ G++ + + + + LL D+ DPR++ Sbjct: 293 IETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRLQ 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 806,900 Number of extensions: 36474 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 4 Length of query: 317 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 234 Effective length of database: 914,170 Effective search space: 213915780 Effective search space used: 213915780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)