BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4598.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 395 e-111 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 155 3e-39 gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 141 5e-35 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 77 1e-15 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/279 (67%), Positives = 238/279 (85%) Query: 23 SRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLKPIGTVGH 82 +RG+W+ V +L+R+P AM AA V+ L++ AA+ APW+ P DP+ SM RL PIG+ G+ Sbjct: 20 ARGYWSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYKGSMIKRLLPIGSEGY 79 Query: 83 LLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSID 142 LLGTDELGRDM SRL+ GGRLSL MG+TPVL AF IG+++G++AGY GG N IIMR +D Sbjct: 80 LLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLAGYVGGRLNMIIMRVLD 139 Query: 143 ILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDYVDAARAS 202 + YAFPSVLLA+A+SGALG G+ N++ +LT+VFVPQ+ R+AESVTTQVR+ DY++AAR S Sbjct: 140 VFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQVRKLDYIEAARMS 199 Query: 203 GASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNTLR 262 GASAF+I+R HVLGNVLGP+FVY+T L+SVSMILA+GLSFLGLGVKPPEPEWGLMLNTLR Sbjct: 200 GASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGVKPPEPEWGLMLNTLR 259 Query: 263 TAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVKQ 301 +AI+ PWVAALPG IF+TSI FNLL+DG+RSAM++++ Sbjct: 260 SAIFRNPWVAALPGLLIFITSIGFNLLADGVRSAMDIRR 298 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 155 bits (392), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 1/265 (0%) Query: 37 NPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAASMFSRLKPIGTVGHLLGTDELGRDMFSR 96 PG ++AA +L LIVA + + DP AAS + + H LGTDE GRD+++R Sbjct: 39 RPGLVLAALFVLFLIVATLQPSLLTSNDPLAASAREAFRA-PSAAHWLGTDENGRDVWTR 97 Query: 97 LLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSIDILYAFPSVLLAIAL 156 L+ G + SL MG+ + IG A+G+ AG + +MR ID+L AFP +LLA+ + Sbjct: 98 LIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAFPDLLLALVI 157 Query: 157 SGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDYVDAARASGASAFTIVRAHVLG 216 G G+ NA+ ++ + VP+ AR+ + T VR + YV+AA G T++ HVL Sbjct: 158 ITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRSTVIIRHVLP 217 Query: 217 NVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTAIYTQPWVAALPG 276 N + PI + +T I + + LSFLG G PP PEWG ML+ R + W+ A PG Sbjct: 218 NAIKPILILATIGIGGKIAAGAALSFLGFGAPPPSPEWGSMLSVGRNFLSNAWWLVAAPG 277 Query: 277 AFIFVTSISFNLLSDGLRSAMEVKQ 301 + +T +S L L E K+ Sbjct: 278 VAVTLTVVSITALGRELLLRSEGKR 302 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 160/292 (54%), Gaps = 19/292 (6%) Query: 18 TAMRR-SRGHWANVAARLVRNPGAMIAAAVLLLLIVAAIAAPWVMPGDPFAAS----MFS 72 T RR SR +A+ A L +LLL+++AA+ AP + P +P+ + M S Sbjct: 12 TPFRRFSRNFFASKVATL--------GFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDS 63 Query: 73 RLKP-----IGTVGHLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAG 127 RL+P ++ ++LGTDE GRDM S +L G R+S+ +G+ +A +IG LG+ AG Sbjct: 64 RLEPGKQNIDHSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAG 123 Query: 128 YAGGFTNTIIMRSIDILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVT 187 Y GG ++IMR DI +FP +L+A+ L +G GI + +L V AR A S Sbjct: 124 YFGGRIESLIMRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAA 183 Query: 188 TQVRRSDYVDAARASGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGV 247 R+ +Y++AA G S V H+L N L P+ V + ++ ++ L + LSFLG+G+ Sbjct: 184 LVERKKEYIEAATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGL 243 Query: 248 KPPEPEWGLML-NTLRTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAME 298 EP GL++ N + + W++ PG + +T ++ NL++D LR + Sbjct: 244 PVTEPSLGLLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRDVLN 295 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 1/220 (0%) Query: 82 HLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSI 141 + LGTD+ GRD+ +RLL G R+S+ G+ ++G G + GY G T+ R + Sbjct: 127 NWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLFFQRFM 186 Query: 142 DILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDYVDAARA 201 +I A P + L I + I L L++ ++ + + R +YV AARA Sbjct: 187 EIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEYVQAARA 246 Query: 202 SGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNTL 261 G S I+ HVL N L P+ + +S +++ + L FLGLGV P G +L Sbjct: 247 LGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGELLAQG 306 Query: 262 RTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVKQ 301 + + W+A + V + + D LR++++V++ Sbjct: 307 KNNLDAW-WIALSTFVVLTVMLLLLTNIGDALRNSLDVRR 345 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 580,209 Number of extensions: 19846 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 4 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)