BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4597.p (363 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 414 e-117 gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPa... 268 4e-73 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 187 8e-49 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 184 1e-47 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 183 2e-47 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 414 bits (1064), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/344 (59%), Positives = 253/344 (73%), Gaps = 6/344 (1%) Query: 14 DIGGPRQPLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGC 73 D GGP QPLL ++ L K+FP++ + R V AVDGVSF + KG+TLG+VGESGC Sbjct: 12 DRGGPAQPLLMIKDLKKYFPVRGELFQRER---KFVHAVDGVSFSVAKGKTLGIVGESGC 68 Query: 74 GKSTTARVLMQLIKQDSGELVFDGQTVGS-RAMPLRQFRRQAQMVFQDSYSSLNPRMTIE 132 GKSTTAR++ +L+ DSG ++FDG+ V + ++FRR QMVFQDS++SLNPR+TI Sbjct: 69 GKSTTARLIARLVTPDSGSMIFDGEGVAEFGGIEFKEFRRNLQMVFQDSFASLNPRLTIS 128 Query: 133 DSIAFAPIVHGLPAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALE 192 +++A+ P HG+ +A RA +LLARVGLQPE+FA RYPHELSGGQRQRVNIARALA E Sbjct: 129 ETVAYGPQAHGVSKAQATERAHALLARVGLQPEQFASRYPHELSGGQRQRVNIARALAFE 188 Query: 193 PRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQ 252 PRLVILDEAV+ALDKSV+AQVLNLL +LK E LTYLFISHDL+VV +ISD V+VMY+GQ Sbjct: 189 PRLVILDEAVAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQ 248 Query: 253 VVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTRC 312 VVE+GP E ++ RHPYTRALL ++PSMDP RT+ PL+GDPPNPINPP GCRF RC Sbjct: 249 VVEMGPVEDIYGNSRHPYTRALLSAVPSMDPANRTQHTPLSGDPPNPINPPSGCRFRERC 308 Query: 313 QFAQPVCQQRAP--AFTEALPLHGVACLRYEAGSGYDATAFEIG 354 A+ VC + P H VAC + SG+ T E+ Sbjct: 309 PHAEAVCAAQVPALMAAAGNAAHTVACHMNDPLSGHTQTLMEVA 352 >gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 333 Score = 268 bits (685), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 139/291 (47%), Positives = 185/291 (63%), Gaps = 4/291 (1%) Query: 49 VRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSGELVFDGQTVGSRAMPLR 108 V AVD + I GE +G+VGESGCGKST R+ + L +G + G + R Sbjct: 39 VHAVDHANLAIHSGEVVGLVGESGCGKSTLGRIAVGLHTLSAGTRWWKGADMAQLTTADR 98 Query: 109 QFRRQA-QMVFQDSYSSLNPRMTIEDSIAFAPIVHGL-PAREAIARARSLLARVGLQPER 166 + + A QM+FQD Y+SLNPRM I+D + AP+ HG+ A E +LL +VGL P Sbjct: 99 RRTQLAMQMIFQDPYASLNPRMRIQDIVGEAPLAHGMVKAAEQKDYVAALLQKVGLDPA- 157 Query: 167 FAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGL 226 R+PH+ SGGQR R+ IARALA+ P L++ DEAV+ALD S++AQVLNL ++L+ E L Sbjct: 158 LVRRFPHQFSGGQRARIGIARALAVRPELLVCDEAVAALDVSIQAQVLNLFIELRNELNL 217 Query: 227 TYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRR 286 TYLFISHDL VVR +SDRV++MYLG++VE P ++F P HPYT ALL S P ++ R+ Sbjct: 218 TYLFISHDLGVVRHVSDRVVIMYLGRIVESSPTIELFAQPNHPYTSALLASAPKLE-VRK 276 Query: 287 TEQAPLAGDPPNPINPPPGCRFHTRCQFAQPVCQQRAPAFTEALPLHGVAC 337 + + G+ P+P++PP GC FH RC A P C P E P H AC Sbjct: 277 IDFVAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLLKEIAPQHFSAC 327 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 187 bits (475), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 157/250 (62%), Gaps = 4/250 (1%) Query: 44 GPANAVR-AVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSGELVFDGQTVGS 102 GP + R AV VSF + KGET+G+VGESG GK+T R+++ L + G + Q Sbjct: 314 GPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNVGNVRLRDQVWSD 373 Query: 103 RA-MPLRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFAPIVHGLPAREAI-ARARSLLARV 160 + R R++ Q+VFQD +S +PR T+E + A V G E ARA LL V Sbjct: 374 LSDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDTEKTRARAIELLHLV 433 Query: 161 GLQPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDL 220 L + + R P ELSGGQRQR+ IARALA EP ++I DE VSALD SV+AQ+L+LL+DL Sbjct: 434 RLD-QSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPVSALDVSVQAQILDLLIDL 492 Query: 221 KQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSMPS 280 K GL+ LFISHDL V+ +SDR+LVM G VVE G +VF+ P+H YT+ LL ++P Sbjct: 493 KDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREVFENPQHIYTQTLLSAIPQ 552 Query: 281 MDPTRRTEQA 290 + +R ++ Sbjct: 553 LGIKKRVAES 562 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 156/282 (55%), Gaps = 28/282 (9%) Query: 44 GPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSG----ELVFDGQT 99 GPA + G+SF + +GE L +VGESG GKS T+R L+ L S L FDG Sbjct: 26 GPA----VIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADRLSFDGDD 81 Query: 100 VGSRAMPLRQFR----RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVHG-LPAREAIARAR 154 + R R +R R+ V QD+ SL+P T+ +A +H L +E + Sbjct: 82 L--RRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQEREEKVI 139 Query: 155 SLLARVGL-QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQV 213 +LL VG+ QPE +YPH+LSGG RQR IA A+A P L+I DE +ALD +V+AQV Sbjct: 140 ALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQAQV 199 Query: 214 LNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRA 273 L+LL L+ L +SHD VV ++DRV VM+ G++VE GP + + P+HPYT++ Sbjct: 200 LDLLESLRTP-DKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAILHDPQHPYTKS 258 Query: 274 LLRSMPSMD---PTRR----TEQAPLAG----DPPNPINPPP 304 LL ++ S+ P R+ TE LA PP IN P Sbjct: 259 LLSAVSSVQKRGPVRQKIAVTEDGHLATLPSELPPGVINNNP 300 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 152/237 (64%), Gaps = 8/237 (3%) Query: 50 RAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDS---GELVFDGQTVGSRA-M 105 + V+ VSF I GE +VGESG GK+ TA L++L QD+ G+++F+GQ + + Sbjct: 17 KVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRL-NQDATYGGKILFEGQDILQKTEA 75 Query: 106 PLRQFR-RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVH-GLPAREAIARARSLLARVGL- 162 +R R M+FQ+ ++LNP TI + IA ++H G+ AR A R LL + G+ Sbjct: 76 AMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEGISARAAALRTVELLDKTGIP 135 Query: 163 QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQ 222 +P+R A YPHELSGGQRQR IA ALA +P+L+I DE +ALD +++ Q++ LL L++ Sbjct: 136 EPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQR 195 Query: 223 EFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSMP 279 E + L I+HDLN+VR +DRV VM G+++EV +Q+F APR YT+ LL S P Sbjct: 196 EENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQLFSAPREAYTKKLLASQP 252 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 144/223 (64%), Gaps = 15/223 (6%) Query: 62 GETLGVVGESGCGKSTTARVLMQLI-KQDSGELVFDGQTVGSRAM-PLRQFRRQAQMVFQ 119 GETLG+VGESG GKST L++L GE+ FDGQ + ++ LR R + Q+VFQ Sbjct: 301 GETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSRDALRPLRARMQIVFQ 360 Query: 120 DSYSSLNPRMTIEDSIAFAPIVH-------GLPAREAIARARSLLARVGLQPERFAGRYP 172 D ++SL+PR T+E + +H G+ R+A+A L VGL E RYP Sbjct: 361 DPFASLSPRRTVEQIVGEGLALHQPQLGPHGI--RKAVADG---LQEVGLSAEMMT-RYP 414 Query: 173 HELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFIS 232 HE SGGQRQR+ IARAL L+P L++LDE S+LD SV+ QVL LL DL++++G+ Y+FIS Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 233 HDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALL 275 HDL V+R ++ RV+VM G+VVE G + V P PYT+ LL Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLL 517 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 175/328 (53%), Gaps = 25/328 (7%) Query: 20 QPLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTA 79 +PL+ VR L F ++ A+D +SFD+ GE LG++GESG GKS T Sbjct: 3 KPLVSVRDLTVAFVGNRRA-----------HALDKISFDLQAGEVLGLLGESGSGKSVTL 51 Query: 80 RVLMQLIKQD----SGELVFDGQTV-GSRAMPLRQFRR-QAQMVFQDSYSSLNPRMTIED 133 R L++L Q SG + DG V + L +R A MVFQ+ + +P TI Sbjct: 52 RTLLRLHPQRTTRISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQ 111 Query: 134 SIAFAPIVH-GLPAREAIARARSLLARVGL-QPERFAGRYPHELSGGQRQRVNIARALAL 191 I A H L R A+ RA +L RV + Q R YPHELSGG RQR IA ALA Sbjct: 112 QITEAIRAHEALDHRSAMQRALQMLERVQIPQARRRYDAYPHELSGGMRQRAMIALALAC 171 Query: 192 EPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLG 251 +PRL++ DE +ALD +V+ Q+L LL +L++E G++ +F++HD+ ++D++ VMY G Sbjct: 172 KPRLLLADEPTTALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGG 231 Query: 252 QVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTR 311 ++VE + PRHPYT LL S S + R + G PP+ P GC F R Sbjct: 232 RIVEENSVAGIVHNPRHPYTAGLLASTVSTE-NRGKPLLAVPGSPPDLSALPLGCSFAPR 290 Query: 312 CQFAQPVCQQRAPAFTEALPLHG--VAC 337 C A+ C P + + L+G +AC Sbjct: 291 CSNARQQCTSEKP---QVISLNGERLAC 315 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 806,542 Number of extensions: 32301 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 63 Length of query: 363 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 279 Effective length of database: 910,473 Effective search space: 254021967 Effective search space used: 254021967 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)