BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4596.p (333 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 366 e-103 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 245 3e-66 gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 243 2e-65 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 206 2e-54 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 204 9e-54 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 366 bits (940), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/333 (56%), Positives = 241/333 (72%), Gaps = 7/333 (2%) Query: 6 KQAMVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPE 65 + +VS+RDL V F + A+ + D+ AGEV+ L+GESGSGKSVTLR+++RLHP+ Sbjct: 2 SKPLVSVRDLTVAFVG-NRRAHALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQ 60 Query: 66 QRTRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRH 125 + TRI G ++VDG DVL + G EL A RG +M+FQEP LA DPVYT+G+QI E IR H Sbjct: 61 RTTRISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAH 120 Query: 126 KKVSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADE 185 + + A +AL + E+V+IP RR DAY HE+SGGMRQRAMIALAL+C P++LLADE Sbjct: 121 EALDHRSAMQRALQMLERVQIPQARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADE 180 Query: 186 PTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAA 245 PTTALDATVQIQILLLLRELQ+E G+S+IFVTHDIGAAVEVAD+IAVMY GRIVE+ A Sbjct: 181 PTTALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVA 240 Query: 246 QLLSQPRHPYTMSLLQSRSHGALQKGQRLPTIAGAPPDLARLPAGCAFAERCAHAQAACQ 305 ++ PRHPYT LL S + +G+ L + G+PPDL+ LP GC+FA RC++A+ C Sbjct: 241 GIVHNPRHPYTAGLLAS-TVSTENRGKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCT 299 Query: 306 SQQP-----PEQRLDAQHTVRCLRAQELQLATA 333 S++P +RL + V L +E +LATA Sbjct: 300 SEKPQVISLNGERLACWNPVSPLLKEETELATA 332 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 245 bits (625), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/258 (46%), Positives = 178/258 (68%), Gaps = 6/258 (2%) Query: 8 AMVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPEQR 67 +++ +++L+V+F T + V+ V +AAGE AL+GESGSGK+VT S++RL+ Q Sbjct: 2 SLLDIQNLQVSFD----TSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLN--QD 55 Query: 68 TRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRHKK 127 G++ +G+D+LQ T + ++RG+DVAMIFQEP+ AL+P++T+G QI E + H+ Sbjct: 56 ATYGGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEG 115 Query: 128 VSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPT 187 +SA A + + L +K IP P+RR +Y HE+SGG RQRAMIA+AL+C PK+L+ADEPT Sbjct: 116 ISARAAALRTVELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 175 Query: 188 TALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQL 247 TALD T+Q+QI+ LL +LQRE ++++ +THD+ ADR+ VM GR++E QL Sbjct: 176 TALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQL 235 Query: 248 LSQPRHPYTMSLLQSRSH 265 S PR YT LL S+ H Sbjct: 236 FSAPREAYTKKLLASQPH 253 Score = 138 bits (347), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 7/223 (3%) Query: 39 GEVVALIGESGSGKSVTLRSIMRLHPEQRTRIEGRLQVDGRDVLQMTGRELSALRGHDVA 98 GE + ++GESGSGKS +++RL ++G + DG+ + + L LR + Sbjct: 301 GETLGIVGESGSGKSTLGLALLRL---SGAHVKGEIAFDGQAITHQSRDALRPLRAR-MQ 356 Query: 99 MIFQEPLLALDPVYTVGEQIIETIRRHKKVSAAQARAQALA-LFEKVRIPSPERRLDAYA 157 ++FQ+P +L P TV + + E + H+ +A+A ++V + + + Y Sbjct: 357 IVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLSA--EMMTRYP 414 Query: 158 HEMSGGMRQRAMIALALSCSPKVLLADEPTTALDATVQIQILLLLRELQRELGLSIIFVT 217 HE SGG RQR IA AL P ++L DEPT++LD +VQ Q+LLLL +LQ++ G++ IF++ Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 218 HDIGAAVEVADRIAVMYAGRIVEQGPAAQLLSQPRHPYTMSLL 260 HD+ +A R+ VM GR+VEQG +LS+P PYT LL Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLL 517 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 243 bits (619), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 192/316 (60%), Gaps = 3/316 (0%) Query: 8 AMVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPEQR 67 A +++++L++ F A ++AV V V G ++ L+GESGSGKS+T SIM L Sbjct: 135 ATLTVQNLQMHFSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPG 194 Query: 68 TRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRHKK 127 + G++ + +D+L ++ + +RG+ VAMIFQ+P++ L+PV + Q++E + H+ Sbjct: 195 KIVGGKILLQEQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQD 254 Query: 128 VSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPT 187 VS A ARA A +V I SP+ RL AY H+ SGGMRQR IA+AL P +++ DEPT Sbjct: 255 VSKATARAMARDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPT 314 Query: 188 TALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQL 247 TALD T+Q QIL +++L RE G ++I++THD+ +AD + VMYAG+IVE G Q+ Sbjct: 315 TALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQV 374 Query: 248 LSQPRHPYTMSLLQSRSHGALQKGQRLPTIAGAPPDLARLPAGCAFAERCAHAQAACQSQ 307 L Q RHPYT L+ S + GQ L I G P L LP+GCAF RC A A C + Sbjct: 375 LEQTRHPYTYGLIASSPSRNI-AGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANT 433 Query: 308 QPPEQRLDAQHTVRCL 323 P + HT RC Sbjct: 434 --PPLSIHGTHTWRCF 447 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 206 bits (523), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/262 (41%), Positives = 164/262 (62%), Gaps = 3/262 (1%) Query: 3 DPDKQAMVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRL 62 D ++ +V + +L V F G + + G+ + GE +AL+GESGSGKSVT R+++ L Sbjct: 6 DQARRPLVEVENLHVRFGHGGPAV--IKGISFALHRGECLALVGESGSGKSVTSRTLVGL 63 Query: 63 HPEQRTRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETI 122 + + RL DG D+ + R +RG + + Q+ L +LDP+ TVG ++ E + Sbjct: 64 TGHRSSLQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPL 123 Query: 123 RRHKKVSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLL 182 + H K++ + + +AL V IP PE RL Y H++SGG+RQRA+IA A++C+P++L+ Sbjct: 124 KLHAKLTKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLI 183 Query: 183 ADEPTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQG 242 ADEPTTALDA VQ Q+L LL L R +++ V+HD +ADR+AVM+ G IVEQG Sbjct: 184 ADEPTTALDAAVQAQVLDLLESL-RTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQG 242 Query: 243 PAAQLLSQPRHPYTMSLLQSRS 264 P +L P+HPYT SLL + S Sbjct: 243 PLDAILHDPQHPYTKSLLSAVS 264 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/257 (37%), Positives = 140/257 (54%), Gaps = 12/257 (4%) Query: 9 MVSLRDLRVTFQAPGKTIR-AVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPEQR 67 +V + +L F P + R AVS V + GE V ++GESGSGK+ R ++ L Sbjct: 302 VVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNV 361 Query: 68 TRIEGRLQV--DGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRH 125 + R QV D D Q R+ + ++FQ+PL + DP YTV + E + Sbjct: 362 GNVRLRDQVWSDLSDAQQRAERK-------RIQVVFQDPLASFDPRYTVERVLFEALGVA 414 Query: 126 KKVSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADE 185 + RA+A+ L VR+ + L E+SGG RQR IA AL+ P+VL+ DE Sbjct: 415 GYTDTEKTRARAIELLHLVRLD--QSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDE 472 Query: 186 PTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAA 245 P +ALD +VQ QIL LL +L+ LGLS +F++HD+G V+DRI VM G +VE G Sbjct: 473 PVSALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVR 532 Query: 246 QLLSQPRHPYTMSLLQS 262 ++ P+H YT +LL + Sbjct: 533 EVFENPQHIYTQTLLSA 549 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 204 bits (518), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 180/326 (55%), Gaps = 18/326 (5%) Query: 7 QAMVSLRDLRVTFQAPG-------KTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSI 59 Q ++ ++DL+ F G K + AV GV VA G+ + ++GESG GKS T R I Sbjct: 18 QPLLMIKDLKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLI 77 Query: 60 MRLHPEQRTRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQII 119 RL T G + DG V + G E R ++ M+FQ+ +L+P T+ E + Sbjct: 78 ARL----VTPDSGSMIFDGEGVAEFGGIEFKEFR-RNLQMVFQDSFASLNPRLTISETVA 132 Query: 120 ETIRRHKKVSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPK 179 + H VS AQA +A AL +V + PE+ Y HE+SGG RQR IA AL+ P+ Sbjct: 133 YGPQAHG-VSKAQATERAHALLARVGL-QPEQFASRYPHELSGGQRQRVNIARALAFEPR 190 Query: 180 VLLADEPTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIV 239 +++ DE ALD +VQ Q+L LL+EL+ E L+ +F++HD+ ++D + VMY G++V Sbjct: 191 LVILDEAVAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVV 250 Query: 240 EQGPAAQLLSQPRHPYTMSLLQS-RSHGALQKGQRLPTIAGAPPDLARLPAGCAFAERCA 298 E GP + RHPYT +LL + S + Q P ++G PP+ P+GC F ERC Sbjct: 251 EMGPVEDIYGNSRHPYTRALLSAVPSMDPANRTQHTP-LSGDPPNPINPPSGCRFRERCP 309 Query: 299 HAQAACQSQQP--PEQRLDAQHTVRC 322 HA+A C +Q P +A HTV C Sbjct: 310 HAEAVCAAQVPALMAAAGNAAHTVAC 335 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 638,630 Number of extensions: 22588 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 58 Length of query: 333 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 249 Effective length of database: 910,473 Effective search space: 226707777 Effective search space used: 226707777 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)