BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4595.p (396 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 278 3e-76 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 86 4e-18 gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 76 4e-15 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 74 1e-14 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 278 bits (712), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 10/368 (2%) Query: 27 LAGVRLAVKDIFDVAGYPTGCGNPHMLAMSGIKNSSAPAVQALLQAGAQFVGKVYTDELA 86 L GVR AVKD+FD+AG TG GNP L+ + N A AV+ LL GA+FVGK TDEL Sbjct: 42 LEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELT 101 Query: 87 FSMNGKNAHFGTPRNGGAPDRIPGGSSSGSASAVSNGLAELALGTDTGGSVRVPASHCGL 146 +S+ G NAH+G PRN +PDR+PGGSSSGS +AV+ GLA++ALGTD GGSVR+PAS+CG+ Sbjct: 102 YSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCGV 161 Query: 147 IGLRPTHGRVSLAGVMELAGSFDTCGWFAREMGLFSRAGDILLGQDSIELPEQPRVMVAA 206 G+RPTHGR+S G + LA SFDT GWFA + + L ++ +P + + Sbjct: 162 WGMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEHLEQTFCALAHAETTSMPATFLTLNDS 221 Query: 207 DVLALLESRVQAVFSQTLDRLAGVIGTPQPVKTATPSFDTLYW--AFRHIQGYEAWQAHG 264 + LL+ V FS+ + + + ++ A+ W AFR +Q EAW HG Sbjct: 222 GINGLLDPAVFDAFSKLKNEQSDFLAVDSELELAS-------WAAAFRILQASEAWMEHG 274 Query: 265 QHIRRHDFQLGPGVAERFTWSATITPQQMAQHSAVRAIFAETFTRLL-GRDGVLLLPSAP 323 + +H +LG + +RF +A +T Q+ VR R+L + V++LP+ P Sbjct: 275 LWVTQHADELGVDIRQRFNIAAGVTATQVRTAQEVRIAAIRELNRILDSQHKVIVLPTVP 334 Query: 324 DVAPLLTDSEQSLENYRNQAVRMLCLAGLSGCPQISLPLMRLDDAPFGLSLIAPPGSDRS 383 APLLT ++++ R ++ +LC+AGL+G PQ+S+P ++++ AP GLS+I G D Sbjct: 335 TPAPLLTADSATVDDVRMRSQHLLCIAGLAGLPQLSMPWIQVNGAPVGLSIIGGRGCDEI 394 Query: 384 LIRYAARL 391 ++ A +L Sbjct: 395 VLHAAHKL 402 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 117/402 (29%), Positives = 165/402 (41%), Gaps = 57/402 (14%) Query: 19 QPQVSTGPLAGVRLAVKDIFDVAGYPTGCGNPHMLAMSGIKNSSAPAVQALLQAGAQFVG 78 P ++T PL GV A KD DVAG T P + I A VQ LL AGA +G Sbjct: 60 NPDLATLPLYGVPFAAKDNIDVAGIRTTAACPE---FAYIAEQHATVVQRLLDAGAIVIG 116 Query: 79 KVYTDELAFSMNGKNAHFGTPRNGGAPDRIPGGSSSGSASAVSNGLAELALGTDTGGSVR 138 K D+ A + G + +G N P+ + GGSSSGSAS V+ GL +LGTDT GS R Sbjct: 117 KTNLDQFATGLVGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGR 176 Query: 139 VPASHCGLIGLRPTHGRVSLAGVMELAGSFDTCGWFAREMG----LFSRAGDILLGQDSI 194 VPA ++GL+PT G +S GV+ + D FA + +F++A G D+ Sbjct: 177 VPAGLNNIVGLKPTVGSLSGRGVVPACRTLDCVSIFATTVADAELVFTQAA----GFDAA 232 Query: 195 E-------------LPEQPRVMVAA--DVLALLESRVQAVFSQTLDRLAGVIGTPQPVKT 239 + LP +PR + A + + + R +G + P Sbjct: 233 DAYSRARPEHVLNKLPAKPRFGIPAQPEFYGDTIAAAAYAQALEAVRASGAVCIPLDFSL 292 Query: 240 ATPSFDTLY---WAFRHIQGYEAW-QAHGQHI----RRHDFQLGPGVAERFTWSATITPQ 291 LY W EA+ + HG I R F+ A F+ + T Q Sbjct: 293 FDQVTALLYDGPWVAERYAAIEAFAKEHGDAIHPVVRDIIFR-----AREFSATDTFNAQ 347 Query: 292 QMAQHSAVRAIFAETFTRLLGRDGVLLLPSAP------DVAPLLTDSEQSLENYRNQAVR 345 A +++ LL+P+AP DVA + Y N Sbjct: 348 YKL------ADLKRAADKIMASVDALLVPTAPTHYKIADVAADPVRRNSHMGKYTN---- 397 Query: 346 MLCLAGLSGCPQISLPLMRLDDAPFGLSLIAPPGSDRSLIRY 387 + L+ C +R D PFGL+LI P SD +L + Sbjct: 398 --FVNLLNWCALAVPANLRSDGLPFGLTLIGPAWSDHALAAF 437 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 104/414 (25%), Positives = 169/414 (40%), Gaps = 56/414 (13%) Query: 24 TGPLAGVRLAVKDIFDVAGYPTGCGNPHMLAMSGIKNSSAPAVQALLQAGAQFVGKVYTD 83 T L G+ +A KDIF + + G+ + + + A V+ QAG +GK+ D Sbjct: 63 TTVLTGIPIAHKDIFVTRDWRSTAGSKML--ENYVSPFDATVVEQFKQAGMVHLGKLNCD 120 Query: 84 ELAFSMNGKNAHFGTPRNGGAPDRIPGGSSSGSASAVSNGLAELALGTDTGGSVRVPASH 143 E A + +N++FG +N IPGGSS GSA+A++ L + TDTGGS+R PA+ Sbjct: 121 EFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAAL 180 Query: 144 CGLIGLRPTHGRVSLAGVMELAGSFD----------TCGWFAREMGLFSRAGDILLGQDS 193 CG+ G++PT+G VS G++ A S D CG M F + +D Sbjct: 181 CGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIERDK 240 Query: 194 IELPEQ------------PRVMVAADVLALLESRVQAVFSQTLDRLAGVIGTPQP-VKTA 240 + PR A + A +E V+A + A ++ P + + Sbjct: 241 EDFTRDLNQPLQGLKIGLPREYFGAGLAADVEQAVRAALKEYEKLGATLVDISLPKTELS 300 Query: 241 TPS---------------FDTLYWAFRHIQGYEAWQAHGQHIRRHDFQLGPGVAERFTWS 285 P+ FD + + +R + Y + R F G V R Sbjct: 301 IPTYYVIAPAEASSNLSRFDGVRYGYR-AKDYTDLSDMYRKTRAEGF--GEEVKRRILVG 357 Query: 286 ATITPQ-----QMAQHSAVRAIFAETFTRLLGRDGVLLLPSAPDVAPLLTD-SEQSLENY 339 A + Q +R + A+ F + + V++ P P VA L D ++ + NY Sbjct: 358 AYVLSHGYYDAYYLQAQKIRRLIAQDFQQAFTQCDVIMGPVCPTVAWDLGDKADDPIANY 417 Query: 340 RNQAVRMLCLAGLSGCPQISLPL-----MRLDDAPFGLSLIAPPGSDRSLIRYA 388 + L+G P +S+P + P GL +I ++ L+ A Sbjct: 418 LADIFTLST--SLAGLPGMSIPCGFGQGEKNSKRPVGLQIIGNYFAEAKLLNVA 469 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (6%) Query: 21 QVSTGPLAGVRLAVKDIFDVAGYPTGCGNPHMLAMSGIKNSSAPAVQALLQAGAQFVGKV 80 Q G L G+ + VKD+ D A PT G+P + +++ V A AGA +GK Sbjct: 62 QPHQGLLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLVDAA--CVAASRSAGAVLMGKT 119 Query: 81 YTDELAFSMNG--KNAHFGTPRNGGAPDRIPGGSSSGSASAVSNGLAELALGTDTGGSVR 138 T E A G +N H GA D PGGSSSGSA+AV++G+ A T T GS+ Sbjct: 120 VTTEFATFQPGPTRNPH-------GATDHTPGGSSSGSAAAVASGMVPAAFATQTAGSIV 172 Query: 139 VPASHCGLIGLRPTHGRVSLAGVMELAGSFDTCGWFAREM 178 PA++CG++G +PT G + LAG+ L+ S DT G R + Sbjct: 173 RPAAYCGVVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNV 212 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 945,420 Number of extensions: 39626 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 4 Length of query: 396 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 311 Effective length of database: 906,776 Effective search space: 282007336 Effective search space used: 282007336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)