BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4593.p
         (298 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981079|ref|YP_001355222.1| transporter of the DMT superfam...   325   2e-90
gi|152981429|ref|YP_001354273.1| transporter of the DMT superfam...    68   6e-13

>gi|152981079|ref|YP_001355222.1| transporter of the DMT superfamily
           chloramphenicol-sensitivity protein (rarD family)
           [Janthinobacterium sp. Marseille]
          Length = 296

 Score =  325 bits (833), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/292 (56%), Positives = 212/292 (72%)

Query: 1   MPYAVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQ 60
           M YA+CA + WG FP+YFK L ++   +I++ R+ W+  FLL VLA RRQW W+  + +Q
Sbjct: 5   MLYALCAYVAWGSFPIYFKSLHDIAPLEILLHRMVWALGFLLIVLAVRRQWAWLSAVLRQ 64

Query: 61  PLVVGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQ 120
           P V+ G   SALLLS NW +Y+WAVN  RI+D SLGYFM+PL++V +G+L+L E++R LQ
Sbjct: 65  PKVLAGFTASALLLSTNWFVYIWAVNHDRIIDASLGYFMTPLVNVLLGFLVLGERLRRLQ 124

Query: 121 WLAVFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPL 180
           W AVF+A   V WLT  NG LPWI L + LTF  YGLLRKTA LGALEGLSLETLL+ PL
Sbjct: 125 WAAVFVAALGVAWLTWENGHLPWIGLTLGLTFGTYGLLRKTAKLGALEGLSLETLLLFPL 184

Query: 181 VLVILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYIS 240
            ++ L   +   SN+F HA T ++ LL+ +GPITA+PLLLFA  ARRIPLS LGL+QYI+
Sbjct: 185 AVLALAVMAWNGSNSFIHAPTASQWLLVAAGPITAIPLLLFATAARRIPLSTLGLLQYIT 244

Query: 241 PTIQLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLWRYLRSRAQSSVE 292
           PT+QLL GV +Y EPF  AR +GF  IW AL +YSA+GLW+  R  A  + +
Sbjct: 245 PTLQLLVGVWLYHEPFSSARLVGFAAIWIALGLYSADGLWQNYRQPAVDAQK 296


>gi|152981429|ref|YP_001354273.1| transporter of the DMT superfamily
           chloramphenicol-sensitivity protein (rarD family)
           [Janthinobacterium sp. Marseille]
          Length = 295

 Score = 68.2 bits (165), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 4/183 (2%)

Query: 1   MPYAVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVEL--- 57
           + ++V +SIL+ +   Y  LL  +   +I   R   +  FL   +  RRQ   I+ L   
Sbjct: 5   ITFSVTSSILFAVLYYYSTLLAPLNGEEIFGWRTLLTFPFLTLFIWSRRQQGLILNLLHR 64

Query: 58  -AKQPLVVGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKM 116
             + P ++ G L ++  L     L++WA   GR ++ SLGYF+ PL  +  G +I KE++
Sbjct: 65  MRQNPALILGALATSAFLGVQLWLFMWAPLHGRALNVSLGYFLLPLTMLMTGRIIYKERL 124

Query: 117 RPLQWLAVFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLL 176
             LQ LA   A   V    +  GSL W ++L+AL +  Y +LR+      + GL  + + 
Sbjct: 125 SRLQNLAAMCAAVGVANELLQIGSLSWETMLVALGYPVYFVLRRRLGSNNIGGLWFDMVF 184

Query: 177 MLP 179
           ++P
Sbjct: 185 LIP 187


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 641,700
Number of extensions: 23468
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 215
Effective length of database: 914,170
Effective search space: 196546550
Effective search space used: 196546550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)