BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4580.p
         (324 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981257|ref|YP_001355242.1| hypothetical protein mma_3552 [...   511   e-146

>gi|152981257|ref|YP_001355242.1| hypothetical protein mma_3552
           [Janthinobacterium sp. Marseille]
          Length = 326

 Score =  511 bits (1316), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/317 (80%), Positives = 285/317 (89%)

Query: 8   PQALQDLRLPIICSPMFIASGPALVAAQCKAGLVGSFPALNARPAELLDTWLSQLQEELA 67
           P  LQ+L LP+I +PMFIASGPALV AQCKAG+VG+FPALNARP ELLD WLS++Q +LA
Sbjct: 10  PAVLQNLALPVIGAPMFIASGPALVKAQCKAGIVGAFPALNARPPELLDAWLSEIQADLA 69

Query: 68  EWQQAHPQRKVGPIAVNQIVHQSNDRLAQDVATCVKHQVPIIISSLRAPPKEMLDAVHSY 127
            +Q  HP   +GPIAVNQIVHQSNDRLA DV  CV+H+VPIIISSLRAPPKEM+DA+HSY
Sbjct: 70  AYQAEHPDAIIGPIAVNQIVHQSNDRLAHDVEVCVRHRVPIIISSLRAPPKEMMDAIHSY 129

Query: 128 GGIVLHDVISLRHAEKALEAGVDGLILVAAGAGGHAGTLSPFALVGEVRKMFKGPLVLSG 187
           GGIVLHDVIS+RHA+KALEAGVDGLILVAAGAGGHAGTLSPF LVGEVRK F+GP+ LSG
Sbjct: 130 GGIVLHDVISIRHAQKALEAGVDGLILVAAGAGGHAGTLSPFVLVGEVRKFFQGPIALSG 189

Query: 188 AIATGDAVLAAQAMGADFAYMGSRWLATRESNVDEAYRQAIVESTAADVVYTNLFTGVHG 247
           AIATGDAVLAAQAMGADFAY+GSRWLAT+ESNVDEAYR+AIV S AADVVYTNLFTGVHG
Sbjct: 190 AIATGDAVLAAQAMGADFAYIGSRWLATKESNVDEAYREAIVSSAAADVVYTNLFTGVHG 249

Query: 248 NYLKKSIVNAGLDPDNLPEADKSKMNFGSGGGSKAKAWRDIWGAGQGVGLMQDVPSVAEM 307
           NYLKKSI+NAGLDPDNLP+ADK+ MNFGSG GSK KAWRDIWGAGQGVGL+ +V SVA++
Sbjct: 250 NYLKKSIINAGLDPDNLPQADKTVMNFGSGSGSKIKAWRDIWGAGQGVGLIDEVASVADI 309

Query: 308 VDRLEAEYRAARARLAL 324
           V R+ AEY AA+ RL +
Sbjct: 310 VRRMSAEYAAAKKRLQI 326


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 749,576
Number of extensions: 31953
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 241
Effective length of database: 914,170
Effective search space: 220314970
Effective search space used: 220314970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)