BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4572.p
         (302 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980111|ref|YP_001351814.1| hydroxymethylglutaryl-CoA lyase...   520   e-149

>gi|152980111|ref|YP_001351814.1| hydroxymethylglutaryl-CoA lyase
           [Janthinobacterium sp. Marseille]
          Length = 309

 Score =  520 bits (1338), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/299 (83%), Positives = 272/299 (90%)

Query: 2   SLPKKVKIVEVGPRDGLQNEKETISAEVKIELVNRLSAAGFPNVEAASFVSPKWVPQMAT 61
           SLP  VKI+EVGPRDGLQNE++TISAE KIELVNRLS AGFPNVEAASFVSPKWVPQMAT
Sbjct: 6   SLPASVKIIEVGPRDGLQNEQQTISAETKIELVNRLSQAGFPNVEAASFVSPKWVPQMAT 65

Query: 62  SAEVMRGITRKPGVIYSALVPNMKGFDAALEAGVDEVVIFGAASEAFSQKNINCSIAESI 121
           S+EVM GITR+PG +YSALVPNMKGF+AAL AGVDEVVIF AASEAFSQKNINCSIAESI
Sbjct: 66  SSEVMAGITRRPGTLYSALVPNMKGFEAALAAGVDEVVIFAAASEAFSQKNINCSIAESI 125

Query: 122 ARFAEVAKAAKDHRKRLRAAVSCAFGCPYQGEVPLDAVADVVRRFRELGCDEIDIADTIG 181
           ARF +VA+AAK H  RLR A+SCAFGCPYQGEV  D+VADVVR+ RELGCDEIDIADTIG
Sbjct: 126 ARFRDVAQAAKQHHLRLRGALSCAFGCPYQGEVTADSVADVVRQLRELGCDEIDIADTIG 185

Query: 182 VATPGKVRPVMETAIREFHIEGLSGHFHDTYGQALANIYASLQTGISIYHASVAGLGGCP 241
           VATP  V+ VM+ AI EF I+ LSGHFHDTYGQALANIYASL+ GISIYHASVAGLGGCP
Sbjct: 186 VATPRHVQAVMQRAIGEFPIDRLSGHFHDTYGQALANIYASLEVGISIYHASVAGLGGCP 245

Query: 242 YAKGATGNVATEDVLYMMHGLGIETGVDLDAVVEAGQFISQQLGRKSVSRAGNAMVAKR 300
           YAKGATGNVATEDVLYMM G GIETG+DLDAVV+AGQFIS+QLGRK+VSRAGNA+ AKR
Sbjct: 246 YAKGATGNVATEDVLYMMQGFGIETGIDLDAVVDAGQFISEQLGRKAVSRAGNAIAAKR 304


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 659,986
Number of extensions: 26681
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 219
Effective length of database: 914,170
Effective search space: 200203230
Effective search space used: 200203230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)