BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4569.p
         (671 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981095|ref|YP_001354662.1| biotin carboxylase [Janthinobac...   392   e-110
gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase la...    63   5e-11

>gi|152981095|ref|YP_001354662.1| biotin carboxylase
           [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/445 (48%), Positives = 286/445 (64%), Gaps = 16/445 (3%)

Query: 1   MFTKILVANRGEIACRVAATARRMGIATVAVYSDADAHAKHVAACDESVHIGPAPAKESY 60
           MF KIL+ANRGEIA R+    R MGI TV V+S+AD  AK+V   DESV IGPAP+  SY
Sbjct: 1   MFEKILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSSLSY 60

Query: 61  LCGDKIIAAALASGAQAIHPGYGFLSENAGFAQACAEAGLVFIGPPASAIDAMGSKSAAK 120
           L    II+AA  + A+AIHPGYGFLSENA FA+   ++G VFIGP + +I  MG K +AK
Sbjct: 61  LNMPAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSDSIRMMGDKVSAK 120

Query: 121 ALMETAAVPLVPGYHGA-RQESDFLRNEADRIGYPVLLKASAGGGGKGMRVVERSEEFDA 179
             M  A VP VPG  GA   ++  +   A +IGYPV++KA+ GGGG+GMRVV        
Sbjct: 121 QAMIKAGVPCVPGSEGALPDDAKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALLN 180

Query: 180 ALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADRHGHCVYLFERDCSVQRRHQKVL 239
           A+   K EA S+FG+  V +EKYL  PRH+EIQ+ AD H + ++L ERDCS+QRRHQKVL
Sbjct: 181 AVTMTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL 240

Query: 240 EEAPAPGMSSQRRAAMGQAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPV 299
           EEAPAPG+  +    +G     A R +GY GAGT EF+  ++G FYF+EMNTR+QVEHPV
Sbjct: 241 EEAPAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLY-ENGEFYFIEMNTRVQVEHPV 299

Query: 300 TEMITGLDLVEWQLRVAAGEALPLQQDQLRLQGHAIEARIYAENPEKGFLPAIGTLSHLR 359
           TEMITG+D+V+ Q+R+AAGE L  +Q  + L GHAIE RI AE+P K F P+ G      
Sbjct: 300 TEMITGIDIVQEQIRIAAGEKLRFRQRDVILSGHAIECRINAEDPFK-FTPSPG------ 352

Query: 360 CAPAVEFTLATAGATQPAAVRIDSGVREGDAISPFYDPMIAKLIVWGTDRQAALRNLTRA 419
                   + +  A     +R+DS    G  + P YD M+ K+I +G  R+ A++ +  A
Sbjct: 353 -------KIVSWHAPGGPGIRVDSHAYAGYYVPPHYDSMVGKVIAYGATREQAIKRMQIA 405

Query: 420 LAQYQVVGLATNIGFLQRLVAGQAF 444
           L++  V G+ TNI   + L+    F
Sbjct: 406 LSEMVVEGIQTNIPLHRELMVDARF 430


>gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase large
           chain [Janthinobacterium sp. Marseille]
          Length = 1076

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 24/237 (10%)

Query: 102 FIGPPASAIDAMGSKSAAK-ALMETAAVPLVPGYHGARQESDFLRNEADRIGYPVLLKAS 160
            IG    AID    +S  K A+ +        G     +ES  ++ E   +G+PV+++ S
Sbjct: 115 LIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGVSHTLEESWAVQKE---LGFPVIIRPS 171

Query: 161 AGGGGKGMRVVERSEEFDAALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADRHGH 220
              GG G  +   +EEF+A    CKR  + +     +L+E+ L   +  E++V  D+  +
Sbjct: 172 FTMGGSGGGIAYNAEEFEAI---CKR-GLEASPTSELLIEESLIGWKEFEMEVVRDKADN 227

Query: 221 CVYLFERDCSVQRRHQ------KVLEEAPAPGMSSQRRAAMGQAAVAAARAVGY-VGAGT 273
           C+ +    CS++            +  APA  ++ +    M  A++A  R +G   G   
Sbjct: 228 CIIV----CSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSN 283

Query: 274 VEFIANQ-DGSFYFMEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGEALPLQQDQLR 329
           V+F  N  DG    +EMN R+     +    TG  + +   ++A G  L    D+LR
Sbjct: 284 VQFSINPADGRMIVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTL----DELR 336


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,393,809
Number of extensions: 53616
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 671
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 581
Effective length of database: 888,291
Effective search space: 516097071
Effective search space used: 516097071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)