BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4567.p
         (138 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981677|ref|YP_001351809.1| hypothetical protein mma_0119 [...   110   3e-26

>gi|152981677|ref|YP_001351809.1| hypothetical protein mma_0119
           [Janthinobacterium sp. Marseille]
          Length = 128

 Score =  110 bits (275), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 80/134 (59%), Gaps = 9/134 (6%)

Query: 5   KDKSGPCPCGQPSFDQCCGRFIGGGQIPETAELLMRSRYSAFALRDEAYLRATWFPDTLP 64
           K  +  CPCG+  +  CC  +  G   P TAE LMRSRYSA+AL    Y+ A+W   T P
Sbjct: 3   KTMTSACPCGKGDYATCCKPYHDGAAAP-TAEALMRSRYSAYALGLMHYVHASWHASTRP 61

Query: 65  E-EELTSETDVKWIGLDIKNHQHASDSDEATVEFVARFKVAGRAHRLHEISHFVRQPDAT 123
              +   +   +W+GL+++  +    +DEATVEFVAR K  GRA RLHE+S FV++    
Sbjct: 62  PLTDFVHDASTRWLGLEVR--KFVPGADEATVEFVARSKTGGRAQRLHEVSRFVKEDG-- 117

Query: 124 GQLRWYYVDGRFPD 137
              RW+Y+DG FP+
Sbjct: 118 ---RWFYIDGVFPE 128


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 354,333
Number of extensions: 13255
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 64
Effective length of database: 947,443
Effective search space: 60636352
Effective search space used: 60636352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)