BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4563.p
         (354 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981949|ref|YP_001351808.1| metallo-beta-lactamase family p...   534   e-153

>gi|152981949|ref|YP_001351808.1| metallo-beta-lactamase family
           protein [Janthinobacterium sp. Marseille]
          Length = 354

 Score =  534 bits (1376), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 247/351 (70%), Positives = 286/351 (81%)

Query: 1   MNALESQLDYAFGDTMPDPGRTLQVAPGVRWLRMGLPFALNHINLWLLEDEVETEQGRQR 60
           MN LE+QL Y F DT+PD G T +V PGV+WLRMGLPFALNHINLWLL DE E E G  R
Sbjct: 1   MNLLEAQLAYPFDDTLPDVGSTFEVMPGVKWLRMGLPFALNHINLWLLADEFEGENGTVR 60

Query: 61  GWTVVDCGIATEETRQAWESIFVEELDGLPILRVLVTHCHPDHVGLADWLCQRWQAPLWM 120
           GWTV+DCGI+ + TR AWES+F  +L+GLPI+RV+ THCHPDHVGLADW+C RW  PLWM
Sbjct: 61  GWTVIDCGISNDATRAAWESVFATQLEGLPIVRVIATHCHPDHVGLADWICSRWNVPLWM 120

Query: 121 STGDYAFARVMSAALPGAEGTAATPHFQRHGLADPDTIATLQGRNTYYQDLVPAVPRAYH 180
           +TG+Y FAR+MSAALPG++GT+  P F+RHGLADP  +A L+GR +YY  LVP+VP +Y 
Sbjct: 121 TTGEYTFARMMSAALPGSDGTSMFPFFKRHGLADPQMLAELEGRRSYYPTLVPSVPTSYI 180

Query: 181 RMQDGHAVHIGGRDWEVITGFGHSPEHVSLYCRPLNVLISGDMVLPRISTNVSVFAIEPE 240
           RM D  +  IGG  W VITGFGH+PEH +LYC  LN+LISGDMVLPRISTNVSVFA+EPE
Sbjct: 181 RMHDTQSFRIGGHAWRVITGFGHAPEHAALYCADLNLLISGDMVLPRISTNVSVFAVEPE 240

Query: 241 SNPVQQYLDSLQKYGHLPADTLVLPSHGKPFRGLHTRIAQLNEHHRLRLGEVLEACATPQ 300
           SNPVQQYLDSL KY  LP DTLVLPSHGKPFRGLHTRI QL +HH  RL EVL+AC TPQ
Sbjct: 241 SNPVQQYLDSLLKYKDLPEDTLVLPSHGKPFRGLHTRIQQLFDHHAARLEEVLKACVTPQ 300

Query: 301 TGVDILPVMFKRPLDTHQLSFALGEAVAHLHKLWYDGAVKRMSGEDGVYRF 351
           +  DI+P+MF R LD+HQLSFALGEA+AHLHKLW DG +KR+ G DGV RF
Sbjct: 301 SAADIVPIMFVRKLDSHQLSFALGEALAHLHKLWKDGMLKRIIGGDGVIRF 351


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 978,668
Number of extensions: 43371
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 270
Effective length of database: 910,473
Effective search space: 245827710
Effective search space used: 245827710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)