BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4562.p
         (172 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthi...   283   6e-78
gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [J...   191   2e-50
gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformyl...    88   3e-19

>gi|152981308|ref|YP_001351833.1| polypeptide deformylase
           [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  283 bits (723), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 150/169 (88%)

Query: 1   MAQLNILRYPDPRLHKVATPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           M+ LNILRYPDPRLHKVA PV+VFDERIK LVADMAETMY APGVGLAA+QVDVHEQV+V
Sbjct: 1   MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDVSDDGKHLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDTDGKAF 120
           ID S+    L+ +INPEI+WAS E +VYDEGCLSVPG+YDGVER A+VKVRAFD DGK F
Sbjct: 61  IDTSETHTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQF 120

Query: 121 EVDADDLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKK 169
           E++AD LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIK K+ KEERE+ +
Sbjct: 121 ELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERELAR 169


>gi|152981416|ref|YP_001353370.1| formylmethionine deformylase
           [Janthinobacterium sp. Marseille]
          Length = 173

 Score =  191 bits (485), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 120/171 (70%), Gaps = 1/171 (0%)

Query: 1   MAQLNILRYPDPRLHKVATPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           M +L++L+YPDPRL+ VA PV    + I++LVADM +TMYA  G+GLAATQVDVH QV+V
Sbjct: 1   MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60

Query: 61  IDVSDDGKHLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDTDGKAF 120
           IDVS+    LQV INP I+     K  Y+EGCLSVP +++ V R A + VRA D DGK  
Sbjct: 61  IDVSEKQNRLQVLINPTIVKMG-GKAEYEEGCLSVPDVFESVRRAAWIHVRALDLDGKTI 119

Query: 121 EVDADDLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKKKA 171
           +V A+ L A+CIQHEMDHL+G VFVE+LSP  + RI   L K+ R    +A
Sbjct: 120 DVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSRRAGSRA 170


>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase
           [Janthinobacterium sp. Marseille]
          Length = 178

 Score = 87.8 bits (216), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 1   MAQLNILRYPDPRLHKVATPVTVFDE-RIKKLVADMAETMYAAPGVGLAATQVDVHEQVV 59
           M    IL+  DPRL +VA PV  F    +  L+ DM +TM+AA G GLAA Q+ V+ ++V
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60

Query: 60  VIDVSDDGKHL-------QVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRA 112
           +     + ++         V INP++   S E     EGCLSVPG+   V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120

Query: 113 FDTDGKAFEVDADDLLAVCIQHEMDHLKGKVF 144
           FD  G     DAD   A  +QHE DHL G ++
Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILY 152


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 373,569
Number of extensions: 13540
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 95
Effective length of database: 936,352
Effective search space: 88953440
Effective search space used: 88953440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)