BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4561.p
         (388 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980408|ref|YP_001351831.1| DNA processing protein [Janthin...   409   e-115

>gi|152980408|ref|YP_001351831.1| DNA processing protein
           [Janthinobacterium sp. Marseille]
          Length = 371

 Score =  409 bits (1050), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/373 (59%), Positives = 269/373 (72%), Gaps = 12/373 (3%)

Query: 21  PASLAAWLRLSFTEGVGPSLARRLLSTFGLPECIWQADHAALSAVVPAQVATALLRAPST 80
           P  LA WLRL    GVG  +AR+LL+ FG P+ I+ +  + L  VV   +A ALL APS 
Sbjct: 4   PDDLAHWLRLERAPGVGAGMARKLLTAFGPPQNIFSSSLSDLQQVVAPPIARALLAAPSA 63

Query: 81  VQRERIAATLAWVQRPGQTIVTLADAAYPQSLLNIADPPLLLYLRGHPALLAAPALAVVG 140
                I  T AW  +    I TLADA YP +LL I DPP+LLY +G  ALL+ PA+A+VG
Sbjct: 64  ATLALIEHTQAWAAQSENHIFTLADADYPGTLLEIHDPPILLYAKGRIALLSHPAIAIVG 123

Query: 141 SRNATTQGITHAARFSEELSRAGLTIVSGLALGIDTAAHEGGLR------GSGSTVAVIG 194
           SRNA+ QGIT+A +F+  LS +GLTI+SGLALGIDTAAH+G L+       +GST+AVIG
Sbjct: 124 SRNASAQGITNAEQFAASLSSSGLTIISGLALGIDTAAHQGALQAMQTHVNAGSTIAVIG 183

Query: 195 TGIDLDYPRRNRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAA 254
           TG+D+ YP RNR LA +IAE GCI+SEY LG P +AANFPRRNR+ISGL+R VLVVEAA 
Sbjct: 184 TGMDIVYPARNRQLAHQIAENGCILSEYPLGMPAIAANFPRRNRIISGLARGVLVVEAAL 243

Query: 255 QSGSLITARMAAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDMLDELPGWSLP 314
           QSGSLITARMAAEQGRD+FAIPGSIH+PL+KGCH LI+QGAKLVET QD+L+EL    +P
Sbjct: 244 QSGSLITARMAAEQGRDMFAIPGSIHSPLAKGCHLLIKQGAKLVETAQDILEELEYAVIP 303

Query: 315 QAVPMTISSERNADDNVDPTSRLVLQAMGHDPLDADTLAQRCKLDVAKLAGILLTLELQG 374
            A       ER A    D     VL +MG+D +DADTLAQRC+LD+A++   LLTLEL G
Sbjct: 304 AA-----PGER-ATPPADAPYAHVLHSMGYDAVDADTLAQRCQLDIAEIHTHLLTLELDG 357

Query: 375 LVELLPGARYRRL 387
             E+LPG  YRR+
Sbjct: 358 HTEILPGGLYRRI 370


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 856,048
Number of extensions: 35111
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 303
Effective length of database: 906,776
Effective search space: 274753128
Effective search space used: 274753128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)