BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4558.p
         (258 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III [Janth...   415   e-117
gi|152980157|ref|YP_001354134.1| exodeoxyribonuclease III [Janth...    94   8e-21

>gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  415 bits (1067), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 191/256 (74%), Positives = 219/256 (85%)

Query: 1   MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTDEFLAPAGYVGHFHY 60
           M KIVSANLNGIRSAAKKGFF W+ K   DF+CVQELKAQA DMT EFL P GY G+FHY
Sbjct: 1   MLKIVSANLNGIRSAAKKGFFTWMAKHDADFICVQELKAQAPDMTPEFLTPPGYTGYFHY 60

Query: 61  AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120
           A+KKGYSG GVY +  PD V+IGFG +EFD EGRYV+CD+G L+VIS+Y PSGSSSEERQ
Sbjct: 61  AEKKGYSGAGVYCKTVPDHVQIGFGCSEFDAEGRYVQCDFGKLSVISVYCPSGSSSEERQ 120

Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180
            AKFRFM+ FLPHL+EL+  GR+ VICGDWNIAH EIDLKN+K N+KNSGFLPEERAW++
Sbjct: 121 LAKFRFMDVFLPHLLELKAQGRDFVICGDWNIAHNEIDLKNFKGNRKNSGFLPEERAWLS 180

Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240
           R+FD++GLVDVYRRLHP TT E YTWWSNRGQA+A NVGWRIDY V+TP +A  A SAAI
Sbjct: 181 RVFDEVGLVDVYRRLHPTTTEECYTWWSNRGQAYAKNVGWRIDYQVATPALAETARSAAI 240

Query: 241 YKEQRFSDHAPLTVVY 256
           YK++RFSDHAPLT+ Y
Sbjct: 241 YKDERFSDHAPLTIDY 256


>gi|152980157|ref|YP_001354134.1| exodeoxyribonuclease III
           [Janthinobacterium sp. Marseille]
          Length = 254

 Score = 94.0 bits (232), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 116/256 (45%), Gaps = 14/256 (5%)

Query: 3   KIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTDEFLAPAGYVGHFHYAQ 62
           KI + N+N ++    +   +WL     D +C+QE K          +  AGY  H  Y  
Sbjct: 2   KIATWNVNSLKVRLPQ-VLQWLTDNPVDVLCLQETKTVNEKFPLAEIEAAGY--HVVYTG 58

Query: 63  KKGYSGVGVYSRRQPDSVRIGFGNTEFDDE-GRYVECDYGDLTVISLYAPSGSSSE-ERQ 120
           +K Y+GV + SR   D V     N  FDDE  R +      + +I  Y P+G S E ++ 
Sbjct: 59  QKTYNGVAILSRHPIDDV--VKNNPLFDDEHQRIIIGTIQGVRIICAYIPNGQSLESDKY 116

Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180
           + K R++      L    K    V + GD+NIA ++ D+ +  + Q        ERA   
Sbjct: 117 QYKLRWLAGLHELLAHELKQHENVALLGDYNIAPEDRDVHDPVAWQGQVLVSEPERAAFV 176

Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240
           R+  ++G  D +R    E   + Y+WW  R   +  N G RID+ + +P +A +  +  I
Sbjct: 177 RM-QEMGFTDAFRMF--EQAEKLYSWWDYRQMGFRLNRGLRIDHILLSPSLAKRCTACVI 233

Query: 241 YKEQRF----SDHAPL 252
            K  R     SDH P+
Sbjct: 234 DKVPRKWEQPSDHTPV 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 655,847
Number of extensions: 27876
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 177
Effective length of database: 921,564
Effective search space: 163116828
Effective search space used: 163116828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)