BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4556.p
         (165 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982778|ref|YP_001352761.1| hypothetical protein mma_1071 [...   135   1e-33

>gi|152982778|ref|YP_001352761.1| hypothetical protein mma_1071
           [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  135 bits (340), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 4/155 (2%)

Query: 1   MKFRTLFLIVLLALVAIFAAVNWTAFTATTTLSLIYTEFQAPLGAVMLGVVVVLTAFFLL 60
           M+ RTLF +++L  +   AA+NW AF   TTL L     QAPLG VMLG+   LT +FL+
Sbjct: 1   MQIRTLFFVIILGAIGALAALNWDAFNTPTTLWLGVATVQAPLGMVMLGLTAALTFYFLV 60

Query: 61  YILALQTSVMLESRRLTKQLEAQRALADQAEHSRFNDLRNYLKTELEQLQTRQSEQQTLL 120
            IL LQ+SVMLE+RR  K+L+  R L    E SRF++L  +++ E++ +  + +E Q+ L
Sbjct: 61  CILYLQSSVMLEARRHAKELQNSREL----EASRFSELHRFIEEEIQAVAKQDAEAQSAL 116

Query: 121 AQRLDALQRDIHQRVEQTENAVAAQVGELDDRLQR 155
            QRLD L   +   VEQ+ N +AA +GEL+DRL+R
Sbjct: 117 LQRLDKLDTGVVSAVEQSGNTLAAYIGELEDRLER 151


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 228,754
Number of extensions: 6731
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 89
Effective length of database: 940,049
Effective search space: 83664361
Effective search space used: 83664361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)