BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4555.p (175 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982120|ref|YP_001351900.1| hypothetical protein mma_0210 [... 248 2e-67 gi|152982695|ref|YP_001355019.1| hypothetical protein mma_3329 [... 67 8e-13 gi|152982711|ref|YP_001354659.1| thioredoxin-related transmembra... 65 2e-12 gi|152982733|ref|YP_001352917.1| PHP-like metal-dependent phosph... 59 2e-10 gi|152983130|ref|YP_001354755.1| thiol:disulfide interchange pro... 59 2e-10 >gi|152982120|ref|YP_001351900.1| hypothetical protein mma_0210 [Janthinobacterium sp. Marseille] Length = 177 Score = 248 bits (632), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 115/177 (64%), Positives = 140/177 (79%), Gaps = 3/177 (1%) Query: 1 MQAQANAAKSG---LMIKLAAVVVVAAIAAFAYFKVNAGNAAPDVTFTQLDGQQVALKDL 57 MQA A K +KL A +V+ A+A Y V+ +A PDVTFT L G+++ +DL Sbjct: 1 MQASPAAPKDTPKRTWLKLLAALVIVALAVVGYMSVSKKDAIPDVTFTNLQGKKITSQDL 60 Query: 58 RGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKL 117 RGKVVM+NFWATSC TCV EMP+M+DTYNK+KD GL+F+AVAM+YDPPNYVLN+ ETRKL Sbjct: 61 RGKVVMINFWATSCVTCVKEMPEMVDTYNKYKDSGLEFIAVAMAYDPPNYVLNFVETRKL 120 Query: 118 PFKVALDTQDKLANAFGDVKLTPTTFVIGKDGNIIKRYVGEPQFAELHQLLEKALAA 174 PF +ALDTQ +LA +FGD+KLTPTT V+ KDG++IKRYVGEP FA LHQLLEKALAA Sbjct: 121 PFTIALDTQGELAKSFGDIKLTPTTLVVDKDGHVIKRYVGEPDFAALHQLLEKALAA 177 >gi|152982695|ref|YP_001355019.1| hypothetical protein mma_3329 [Janthinobacterium sp. Marseille] Length = 172 Score = 66.6 bits (161), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 15/146 (10%) Query: 38 AAPDVTFTQ--LDGQQVALKDLRGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDF 95 AAP+ T + L+ + + ++ LRGKVV+V+FW +C C+ +P + + K+KD+GL Sbjct: 29 AAPEFTGIEKWLNSEPLTMQKLRGKVVLVDFWTYACINCIRTLPYVKSWHEKYKDQGLAV 88 Query: 96 VAVAMSYDPPNYVLNYT--------ETRKLPFKVALDTQDKLANAFGDVKLTPTTFVIGK 147 V V P Y + + + + VA D + A+ + + P ++I K Sbjct: 89 VGVHT----PEYPFERSTENVSKAIQRFDIKYPVAQDNRYATWTAYSN-QYWPAVYLINK 143 Query: 148 DGNIIKRYVGEPQFAELHQLLEKALA 173 G I+ + GE ++ E ++ LA Sbjct: 144 KGQIVYTHFGEGKYQETEARIQALLA 169 >gi|152982711|ref|YP_001354659.1| thioredoxin-related transmembrane protein [Janthinobacterium sp. Marseille] Length = 173 Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 49 GQQVALKDLRGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVAMSYDPPNYV 108 G+ L + +GK ++VNFWAT C CV EMP++ + + + + + V + D P+ + Sbjct: 50 GKMHTLGEWQGKTLIVNFWATWCAPCVEEMPELTELQTELAGKNIQILGVGI--DSPSNI 107 Query: 109 LNYTETRKL--PFKVALDTQDKLANAFGD-VKLTPTTFVIGKDGNIIKRYVGEPQFAELH 165 + K+ P +A T +L+ FG+ P T +IG G++ K Y+G + +L Sbjct: 108 REFAAKYKITYPLYIAGLTGSELSRQFGNQAGGLPFTVIIGPKGDVRKTYLGRLKMDQLR 167 >gi|152982733|ref|YP_001352917.1| PHP-like metal-dependent phosphoesterase [Janthinobacterium sp. Marseille] Length = 352 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%) Query: 36 GNAAPDVTFTQLDGQQVALKDLRGKV-VMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLD 94 G P V +DG+Q+ L + GK V + FWAT C C +MP Y + R + Sbjct: 54 GAPGPYVKLKTIDGKQIDLGAIYGKQPVYLKFWATWCIPCREQMPAFERVYQEEGKR-IK 112 Query: 95 FVAVAMSY-DPPNYVLNYTETRKLPFKVALDTQD-KLANAFGDVKLTPTTFVIGKDGNII 152 +A+ + D + Y +K+P + + D LA +F ++++TPT +I KDG I Sbjct: 113 VIAINAGFSDNEAAIQEY--KKKIPMHMPIVIDDGSLARSF-NIRVTPTHVLIDKDGRIA 169 Query: 153 KRYVGEPQFAELHQLLEKALAAA 175 ++G + + H L K L A Sbjct: 170 --HIGHLEDDKFHAALAKVLGGA 190 >gi|152983130|ref|YP_001354755.1| thiol:disulfide interchange protein [Janthinobacterium sp. Marseille] Length = 279 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 33 VNAGNAA--PDVTFTQLDGQQVALKDLRGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKD 90 VN NA P F+ DG V L D++ + V+VN WA+ C C EMP F + Sbjct: 129 VNPDNAPRLPTTVFSDSDGGPVTLSDIQKRPVVVNLWASWCPPCRREMPAFRRAEEAFPE 188 Query: 91 RGLDFVAVAMSYDPPNYVLNYTETRKLPFKVALDTQDKLANAFGDVKLTPTTFVIGKDGN 150 + FV + + V + E KL F+ + + L + PTT +G Sbjct: 189 --VKFVMLNQG-ESQAVVFKFLEKEKLEFEHMVLDRGSLLMREARISGLPTTLFFDSEGR 245 Query: 151 IIKRYVGEPQFAELHQLLEK 170 ++ R++GE L+ L + Sbjct: 246 LMDRHMGEFTLPALYDSLRR 265 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 356,057 Number of extensions: 12899 Number of successful extensions: 45 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 5 Length of query: 175 Length of database: 1,221,021 Length adjustment: 77 Effective length of query: 98 Effective length of database: 936,352 Effective search space: 91762496 Effective search space used: 91762496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)