BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4554.p
         (219 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981723|ref|YP_001351896.1| hypothetical protein mma_0206 [...   223   6e-60

>gi|152981723|ref|YP_001351896.1| hypothetical protein mma_0206
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score =  223 bits (569), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 159/216 (73%)

Query: 1   MNDARSLLTRLRRPLAAVALGGMVALSLQGCFAVLAGGALATTFAATDRRTLGAQTEDKA 60
           M D +S +   +RPLA   +GG +A+SLQGC  V+ GG +A T AATDRRTLGAQTEDK+
Sbjct: 1   MTDLKSFMHAAKRPLALALVGGALAISLQGCVGVMVGGVVAGTLAATDRRTLGAQTEDKS 60

Query: 61  IVVKGEARIPEVVAAGSHVNVTAFNRKVLLSGEVPDEASKAAAEREVKAIQNVETVYNEL 120
           I VKGE  +P+VV    HVNVT+FNRKVLL+GEVP EA+K AA REV  I+ V++V NEL
Sbjct: 61  IAVKGEIAVPKVVGDAGHVNVTSFNRKVLLTGEVPSEAAKEAAAREVAKIEGVQSVVNEL 120

Query: 121 EVGPASSFGSRSTDALITSKVLASLVDDKALYASAFKVTTERGIVYMMGRVTPREGQRAA 180
            V  AS FGSRS D LIT KV AS+VD++ LYA++ KV TERGIVY+MGRVT +EG  AA
Sbjct: 121 AVSGASGFGSRSNDTLITGKVKASIVDNRTLYANSIKVVTERGIVYLMGRVTEKEGDLAA 180

Query: 181 QIASGVSDVNKVVTLFEYITEDQLKEYQRKPASENK 216
            IA GVS V KVV +FEYI++D+ +     P S+ K
Sbjct: 181 NIARGVSGVQKVVKVFEYISDDEYRMLTTTPESQQK 216


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 355,572
Number of extensions: 11628
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 139
Effective length of database: 925,261
Effective search space: 128611279
Effective search space used: 128611279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)