BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4549.p
         (409 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980505|ref|YP_001351891.1| rare lipoprotein A [Janthinobac...   300   7e-83

>gi|152980505|ref|YP_001351891.1| rare lipoprotein A
           [Janthinobacterium sp. Marseille]
          Length = 340

 Score =  300 bits (769), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 184/358 (51%), Positives = 227/358 (63%), Gaps = 58/358 (16%)

Query: 58  TPTKSASARPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVADAEPQVEPISKAASRP 117
           +P+ S++ R S  P LP AGSGRGGYYKDDGPGD IPDGL ++ DAEP+VEP +   ++P
Sbjct: 35  SPSGSSATRSSTTPVLPPAGSGRGGYYKDDGPGDDIPDGLENLPDAEPRVEPYANRGNKP 94

Query: 118 YAVFGKTYVPITDNNQPFIQRGIGSWYGKKFHGQKTSSGELYDMYKMTAAHPTLPIPSYA 177
           Y VFGK YVPI+D  +PF QRG GSWYGKKFHGQKTSSGE YDMY+MTAAHPTLPIPSYA
Sbjct: 95  YVVFGKQYVPISDE-RPFKQRGRGSWYGKKFHGQKTSSGEPYDMYQMTAAHPTLPIPSYA 153

Query: 178 RVTNLKTGKQVIVRINDRGPFHSNRIIDLSYTAALKLGYLGTGSSELEVERILPDEAQRM 237
           RVTNL  G+QVIVR+NDRGPFHS+R+IDLSYTAALKLGY+G GS+ELEVER+LP + +R+
Sbjct: 154 RVTNLSNGRQVIVRVNDRGPFHSSRVIDLSYTAALKLGYIGHGSAELEVERLLPADIERI 213

Query: 238 ADARRNGSSTTMLAAADPINRAADTGAGVSTGAVEINRVSAQNLPPQPTVAAVQPINAST 297
                N  + TM++ A P+                            PTV AV       
Sbjct: 214 ---NANKGAATMVSDASPVQ--------------------------PPTVEAV------- 237

Query: 298 SSAAGGAGLAGGGGIINAVASGTAPSPAMP------QAVPLTAGYYLQFGAYSQEANALV 351
                         +     + TAP+P  P       AVP  AG+YLQFGA+SQ ANA  
Sbjct: 238 -------------ALAPPPQNSTAPAPQNPVTQQAEAAVP--AGFYLQFGAFSQMANAEA 282

Query: 352 ARDKLLPSLSGIVDNMQAVQVNGLYRLYAGPYPTRPEAQNAAMLVRQRSAGTPFIVER 409
            R +L   +   +  ++    N LYRLY+GP+ +R EA  AA+ V+Q     PFIV+R
Sbjct: 283 VRARLAQDVGQSLPQLKVEPSNNLYRLYSGPFASRGEAAAAALQVQQSGINKPFIVQR 340


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 970,086
Number of extensions: 42226
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 324
Effective length of database: 906,776
Effective search space: 293795424
Effective search space used: 293795424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)