BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4548.p
         (369 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981236|ref|YP_001351890.1| rod shape-determining protein R...   523   e-150
gi|152980610|ref|YP_001354706.1| FtsW cell division protein [Jan...    99   3e-22

>gi|152981236|ref|YP_001351890.1| rod shape-determining protein RodA
           [Janthinobacterium sp. Marseille]
          Length = 371

 Score =  523 bits (1346), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/368 (72%), Positives = 319/368 (86%)

Query: 2   SLQRPPLWQIIKPHLTVFDGALSLIVFLIVSVGIVTLYSAGMNFPGRVEDQLRNILVAFV 61
            + +  L QII P++ +FD  L +IV +I++VG VTLYSAG++FPGRVED +RNI+++FV
Sbjct: 4   QMNKRSLGQIILPYIQMFDVPLIIIVSMILAVGTVTLYSAGIDFPGRVEDHVRNIMISFV 63

Query: 62  IMWIAANVSPQLLLRLAVPVYTIGVTLLIAVALFGIIKKGSRRWLNIGMVVQPSEIMKIA 121
           +MWIAA + PQ L+R AVP+Y  G+ LL+AVA FG+I+ G+RRW+++G+VVQPSEIMKIA
Sbjct: 64  VMWIAAAIPPQTLMRFAVPLYVTGIILLLAVAQFGLIRNGARRWVDLGVVVQPSEIMKIA 123

Query: 122 MPLMLAWYFQKREGMLRWDAFLVAAVLLLIPGFLIIRQPDLGTGLLVLAAGFYVIFFAGL 181
           MP+MLAW+FQKREG+ RW  FL+A ++L+ P  LI+RQPDLGT LLVLAAGFYVIF AGL
Sbjct: 124 MPMMLAWFFQKREGVTRWREFLIAGLMLIAPVGLIMRQPDLGTSLLVLAAGFYVIFLAGL 183

Query: 182 PWKILLGLVIAGAASLPVVWSFMHDYQRQRVMMLIDPTSDPLGKGFHIIQSTIAIGSGGV 241
            WK+L+   I+ AASLPVVWS +HDYQR RV+ LIDPT+DPLGKGFHIIQSTIAIGSGG+
Sbjct: 184 SWKVLVAAAISVAASLPVVWSMLHDYQRGRVLTLIDPTTDPLGKGFHIIQSTIAIGSGGI 243

Query: 242 TGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLILYLLLIGRGLMITANAPS 301
           TGKGWL GTQ HLEFIPERTTDFIF+V+SEEFGLIGN VLL LYLLLIGR ++I ANAP+
Sbjct: 244 TGKGWLNGTQAHLEFIPERTTDFIFAVFSEEFGLIGNCVLLFLYLLLIGRSMIIAANAPT 303

Query: 302 LFTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVTLGLGAGILMSIQ 361
           LF+RLL GAIT+IFFTYAFVNMGMVSGILPVVGVPLPF SYGGTA VTLGLG GILMSIQ
Sbjct: 304 LFSRLLAGAITLIFFTYAFVNMGMVSGILPVVGVPLPFFSYGGTAFVTLGLGVGILMSIQ 363

Query: 362 RHRKLVQS 369
           RHRKL+QS
Sbjct: 364 RHRKLMQS 371


>gi|152980610|ref|YP_001354706.1| FtsW cell division protein
           [Janthinobacterium sp. Marseille]
          Length = 402

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 147/278 (52%), Gaps = 14/278 (5%)

Query: 100 KGSRRWLNIGMV-VQPSEIMKIAMPLMLAWYFQKREGMLRW--DAFLVAAVLLLIPGFLI 156
            G+RRWL+  +  +QPSE+MK+ + L  A Y  +++  +      F+   + +   G L+
Sbjct: 123 NGARRWLSFKVFNLQPSELMKLFVVLYAADYTVRKQQYMHKLTKGFMPMTLAIGFVGLLL 182

Query: 157 IRQPDLGTGLLVLAAGFYVIFFAGLP--WKILLGLVIAGAASLPVVWSFMHDYQRQRVMM 214
           + +PDLG   +++     ++F  G+   W   +G  + G  S+ +V S    ++R+R+  
Sbjct: 183 LLEPDLGAFGVIVCIAMGILFLGGINGIWFGGIGATLVGIFSMVIVLS---PWRRERIFA 239

Query: 215 LIDP--TSDPLGKGFHIIQSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVYSEE 272
            ++P    + LGK + +  S IA G G + G G L G+   L ++PE  TDF+ +V  EE
Sbjct: 240 YLNPWEEENALGKAYQLSHSLIAFGRGELFGVG-LGGSVEKLHYLPEAHTDFLLAVIGEE 298

Query: 273 FGLIGNIVLLILYLLLIGRGLMITANAPSL---FTRLLGGAITMIFFTYAFVNMGMVSGI 329
            G +G +V++ L+  +I R   I   A ++   F  L    I +     AF+NMG+  G+
Sbjct: 299 LGFVGVLVVVALFYWIIKRAFEIGRQAIAIDLTFAGLTAKGIGIWIGVQAFINMGVNLGL 358

Query: 330 LPVVGVPLPFMSYGGTALVTLGLGAGILMSIQRHRKLV 367
           LP  G+ LP MSYGG+ ++   +G  IL+ I    +++
Sbjct: 359 LPTKGLTLPLMSYGGSGVLINCIGLAILLRIDYENRVL 396


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.146    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 826,538
Number of extensions: 34943
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 284
Effective length of database: 906,776
Effective search space: 257524384
Effective search space used: 257524384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)