BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4547.p (657 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981159|ref|YP_001351889.1| penicillin-binding protein 2 [J... 956 0.0 gi|152979995|ref|YP_001354711.1| FtsI cell division protein [Jan... 137 2e-33 >gi|152981159|ref|YP_001351889.1| penicillin-binding protein 2 [Janthinobacterium sp. Marseille] Length = 637 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/626 (73%), Positives = 536/626 (85%), Gaps = 2/626 (0%) Query: 1 MTEFKNTAHELRLFRMRLLAASVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 MTE KNT EL LFR+RL A +V + F LLARF+WLQV +H+ Y AQAE+NRISVVP Sbjct: 1 MTELKNTERELHLFRLRLSVAGFVVFILFGCLLARFIWLQVYKHNDYVAQAEDNRISVVP 60 Query: 61 IVPNRGLIMDRNGVVLARNYSAYTLEITPSKIKTNIDDLIDELSTIVEIQPRDRRRFRRL 120 +VPNRGLI+DRNGVVLARNYSAYTLEITPSKI +++ LIDEL+T+V+IQP+DRRRF++L Sbjct: 61 VVPNRGLIVDRNGVVLARNYSAYTLEITPSKINGDLETLIDELATLVDIQPKDRRRFKKL 120 Query: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 QEES+N S PIR RLTDEEVA+F+AQRYRFPGVE+QARLFRQYP G A+HVIGYIGRI Sbjct: 121 QEESRNLASSPIRVRLTDEEVARFSAQRYRFPGVEIQARLFRQYPLGSVASHVIGYIGRI 180 Query: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISASGRAVRSLSRT 240 +QR+A+ I + DD NY GT++IGKEG+EK+YE +LHG TGYEEVE+SA GR +R+LSRT Sbjct: 181 NQREAKEIDEGDDATNYRGTEHIGKEGVEKNYEDKLHGRTGYEEVEVSAGGRPIRTLSRT 240 Query: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 ATPG NLILSIDIELQKVVE+AFGD++GAL+AI P+TGD+LAYVS P++DPNLFVEGID Sbjct: 241 AATPGDNLILSIDIELQKVVEQAFGDRRGALIAIEPSTGDVLAYVSMPTFDPNLFVEGID 300 Query: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGFFVLGN 360 QQ+WD LN SPD PLLNRPLSG Y PGSTYKPFMALAALELGKR+P DAI DPG+F GN Sbjct: 301 QQNWDALNNSPDHPLLNRPLSGAYPPGSTYKPFMALAALELGKRKPSDAISDPGYFWFGN 360 Query: 361 HRFRDDKEGGHGIVDMYRSIVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 H+FRDDKEGGHG VDMY+SIV SCDTYYYMLAND+GV+AIHDFMKPFGFGQ TGIDL E Sbjct: 361 HKFRDDKEGGHGFVDMYKSIVQSCDTYYYMLANDLGVDAIHDFMKPFGFGQKTGIDLRFE 420 Query: 421 KRGILPSTDWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 + G+LPST WK A+RKPEQK+W AG+T+S+GIGQGYNSFTPLQLA ATA+LANNGVVMK Sbjct: 421 RTGVLPSTAWKAAAYRKPEQKKWYAGETISIGIGQGYNSFTPLQLAHATAVLANNGVVMK 480 Query: 481 PHLVKIIEDGVTHERTETVPKESYRIPLKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 PHLVK+IE+G T +RT TVPKESYRIPLKQENID IK AMVGV KEGTGA AF A Y S Sbjct: 481 PHLVKMIENGTTRQRTLTVPKESYRIPLKQENIDVIKNAMVGVNKEGTGARAFARAEYVS 540 Query: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIFHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 GKTGTAQV+ I KN+KYD+ K+S HD+ LY FAPAD PRIA+A +VENGG+G A Sbjct: 541 AGKTGTAQVIAIKKNEKYDASKISDRHHDHALYTAFAPADNPRIALAIIVENGGFGGAAA 600 Query: 601 APLVRKAMDYFMLGKRPNEPIKSVAP 626 AP+ ++AMD+++LGKRP + K+ AP Sbjct: 601 APIAKQAMDFYLLGKRPED--KAQAP 624 >gi|152979995|ref|YP_001354711.1| FtsI cell division protein [Janthinobacterium sp. Marseille] Length = 586 Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 160/614 (26%), Positives = 256/614 (41%), Gaps = 102/614 (16%) Query: 8 AHELRLFRMRLLAASVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVPIVPNRGL 67 A +L +R R++ L+ F L R LWLQ + + Q + + RG Sbjct: 23 ATKLPAWRSRVVL--FLIFAAFLTLAGRALWLQGMSTEFLQKQGASRYARTLELPATRGK 80 Query: 68 IMDRNGVVLARNYSAYTLEITPSKIKTNIDDLIDELSTIVEIQPRDRRRFRRLQEESKNF 127 I DRNG VLA + + P + + + + L+ ++++ R+ RR + + F Sbjct: 81 ITDRNGQVLASSVPVRAVWAIPEDVLESPPEKLQALAKLLDMPERE---LRRKLDSDRTF 137 Query: 128 ESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRISQRDAER 187 V ++ ++ + V K + G++ + R YP G+ AH++G+ Sbjct: 138 --VYLKRQVELDTVDKIL--KLGIAGIDTRKEYKRYYPEGEVMAHIVGF----------- 182 Query: 188 IADSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISASGRAVRSLS--RTPATPG 245 + +D+ G+EG+E +Y+ L G TG V GR V + R P G Sbjct: 183 -TNVEDK---------GQEGMELAYQKTLVGVTGSRRVIKDRLGRIVEDIESVREPHD-G 231 Query: 246 KNLILSIDIELQKVVEEAFGD-------QKGALVAINPATGDILAYVSQPSYDPNLFVEG 298 K+L LSID ++Q + A + + G +V ++ TG++LA + P+Y+PN Sbjct: 232 KDLALSIDSKIQYIAFSALKEAVEVNKAKAGGIVVMDAKTGEVLALANLPTYNPN----- 286 Query: 299 IDQQSWDELNKS--PDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRD-PGF 355 N+S L NR ++ + PGST KPF LE + P I+ PG Sbjct: 287 ---------NRSVLTGAQLRNRVITDTFEPGSTMKPFSVALGLETNRVTPNTMIQTAPGK 337 Query: 356 FVLGNHRFRDDKEGGHGIVDMYRSIVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGI 415 +G D G++ + + I S + +A M + + D GFGQ I Sbjct: 338 MTIGTATIGDAH--ASGLLSVSQVIEKSSNIGTAKIALQMEPHEMWDLFTSVGFGQQPKI 395 Query: 416 DLEHEKRG-ILPSTDWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILAN 474 + G + P W R I T+S G G S + LQ+ A + A Sbjct: 396 NFPGAVAGRVRPYKSW-----------RPIEQATMSYGHGI---SVSLLQMVHAYTVFAR 441 Query: 475 NGVVMKPHLVKIIEDGVTHERTETVPKESYRIPLKQENIDFIKRAMVGVVKEGTGAAAFR 534 +G ++ +T +RT P K R+M+ + TG+A Sbjct: 442 DGDLIP----------ITFQRTTDQPIGERIFSAKTAR---QMRSMLEMAAGPTGSAPRA 488 Query: 535 GAP-YESGGKTGTAQVVNIAKNQKYDSKKLSRIFHDNGLYIGFAPADAPRIAIAAVVENG 593 P Y GKTGTA I K Q Y K +S ++GFAP PRI IA +++ Sbjct: 489 QVPGYRVAGKTGTA--YKIEKGQ-YVRKYVSS-------FVGFAPVSDPRIIIAVMIDEP 538 Query: 594 G----WGAGVAAPL 603 G +G VAAP+ Sbjct: 539 GAGKHYGGQVAAPV 552 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,533,864 Number of extensions: 66203 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 2 Length of query: 657 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 568 Effective length of database: 891,988 Effective search space: 506649184 Effective search space used: 506649184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)