BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4546.p
         (169 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980193|ref|YP_001351888.1| MreD rod shape-determining prot...   243   4e-66

>gi|152980193|ref|YP_001351888.1| MreD rod shape-determining protein
           [Janthinobacterium sp. Marseille]
          Length = 171

 Score =  243 bits (621), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 144/171 (84%), Gaps = 2/171 (1%)

Query: 1   MNNQ--TILLPASPLFIAFSLIVAFVLNLMPWGQMVGVPDFVALALVFWNIHQPRKVGIS 58
           MN+Q   ILLPASP FIA SLI+AF+LNL+PWGQ +GVPDFVAL LVFW++HQPRKVGI 
Sbjct: 1   MNHQPHYILLPASPAFIALSLIIAFLLNLLPWGQWIGVPDFVALLLVFWSMHQPRKVGIG 60

Query: 59  AAFLMGLLMDVNESTLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLMLLAQAV 118
            AF MG+LMDV+++ +LGENALAYTLLSYFAIMIHRRVLWFP  TQALHV  L+L  Q V
Sbjct: 61  VAFFMGILMDVHDAAVLGENALAYTLLSYFAIMIHRRVLWFPNGTQALHVFLLLLGTQLV 120

Query: 119 QLVIQLLVTGKSPDWFYFSESVVSALLWPVVSILLLAPQRRAVDRDENRPI 169
           QL+++L V G  P W YF+ES V+ALLWPVV+ +LLAPQRRA++RD+ RP+
Sbjct: 121 QLIVRLFVGGNFPGWLYFAESAVAALLWPVVTWILLAPQRRAINRDDTRPL 171


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 333,116
Number of extensions: 11366
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 92
Effective length of database: 936,352
Effective search space: 86144384
Effective search space used: 86144384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)