BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4545.p
         (382 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980391|ref|YP_001351887.1| rod shape-determining protein M...   407   e-115

>gi|152980391|ref|YP_001351887.1| rod shape-determining protein MreC
           [Janthinobacterium sp. Marseille]
          Length = 330

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/303 (65%), Positives = 243/303 (80%), Gaps = 1/303 (0%)

Query: 23  PPLFKQGASARVRVTVFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRDAFT 82
           PPLFKQGASAR ++  FALI++V+L VD+ M  L  +RQ + TALYP Q VA+ PRDA  
Sbjct: 6   PPLFKQGASARAKMVFFALIALVLLGVDSHMRSLAVVRQVISTALYPLQVVALAPRDALY 65

Query: 83  NSADYFSSMASLQKENHQLRQQQIVNAQLMQQERLLAAENAQLRKLLDMQQKVPVKSIVG 142
              DYF+S++ ++KEN +L+QQQ +NA+ +QQ + L AEN QLR+LL   +++PVKS++G
Sbjct: 66  YVGDYFTSLSDIKKENEKLKQQQTLNARTLQQGQQLLAENTQLRELLGTSERLPVKSVLG 125

Query: 143 EILYDARDPFTRKIILNRGSQQGVMPGQPVIDDVGIVGQVTRVFPFTSEVTLLTDKDQAI 202
           EILYD RD FTRKI+L+RG+Q GV  GQPVID VG+VGQVTRVFPF+SEVTLLTDK+QAI
Sbjct: 126 EILYDTRDAFTRKIVLDRGTQHGVALGQPVIDHVGVVGQVTRVFPFSSEVTLLTDKNQAI 185

Query: 203 PVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASVVLV 262
           PVQV+RNGLRSVAYGRGQ+  LDLRFMP NADIQKGDVLVTSGIDG+YPPGL+VA+V  V
Sbjct: 186 PVQVVRNGLRSVAYGRGQSNVLDLRFMPTNADIQKGDVLVTSGIDGIYPPGLAVATVAQV 245

Query: 263 ETRSADSFARIVCRPLAGIDRHRQLLILLVEQNMPPRPEPDVVDEKSAKLFKRRLRDSTR 322
           E +S DSFARIVC+P AGIDR+RQLLILL E  + PRP PD   +K+AK+       ++R
Sbjct: 246 ENKSVDSFARIVCQPSAGIDRNRQLLILLTENKLEPRP-PDDAKDKNAKMAGILRHAASR 304

Query: 323 DNG 325
            NG
Sbjct: 305 TNG 307


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 748,426
Number of extensions: 29319
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 297
Effective length of database: 906,776
Effective search space: 269312472
Effective search space used: 269312472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)