BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4542.p (488 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 817 0.0 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 119 4e-28 gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 112 6e-26 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 110 2e-25 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/488 (83%), Positives = 442/488 (90%), Gaps = 4/488 (0%) Query: 1 MHKLTLKELSAQLQARKISATELATLFLDRIEASDLNAFLHVDRALTLAQAQAADVRLAG 60 MH TLKELSA L +++ISATELA LFLDRI SDLNAFLHVD ALTL +A AD RLA Sbjct: 1 MHTKTLKELSALLHSKQISATELAQLFLDRIAQSDLNAFLHVDPALTLKEAALADQRLAS 60 Query: 61 NDAGPLTGVPIAHKDIFVTRNWRTTAGSHMLQDYVSPFDATVVEQFNAAGTVTLGKLNCD 120 D LTG+PIAHKDIFVTR+WR+TAGS ML++YVSPFDATVVEQF AG V LGKLNCD Sbjct: 61 GDTTVLTGIPIAHKDIFVTRDWRSTAGSKMLENYVSPFDATVVEQFKQAGMVHLGKLNCD 120 Query: 121 EFAMGSSNENSFYGPVKNPWDKTAIPGGSSGGSAAAVAARLAPAATATDTGGSIRQPASL 180 EFAMGSSNENS++G VKNPWDK AIPGGSSGGSAAA+AARL PA+TATDTGGSIRQPA+L Sbjct: 121 EFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAAL 180 Query: 181 CGVTGIKPTYGSVSRYGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDERDSTSLQRPK 240 CGVTGIKPTYGSVSR+GMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFD RDSTS++R K Sbjct: 181 CGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIERDK 240 Query: 241 EDFTRSLNQSLQGLRIGVPREFFGAGLAADVEAAVRGALAEFEKLGATLVDISLPKTELS 300 EDFTR LNQ LQGL+IG+PRE+FGAGLAADVE AVR AL E+EKLGATLVDISLPKTELS Sbjct: 241 EDFTRDLNQPLQGLKIGLPREYFGAGLAADVEQAVRAALKEYEKLGATLVDISLPKTELS 300 Query: 301 IPVYYVIAPAEASSNLSRFDGVRYGHRAATYGNLDDMYKKSRAEGFGEEVKRRILVGSYV 360 IP YYVIAPAEASSNLSRFDGVRYG+RA Y +L DMY+K+RAEGFGEEVKRRILVG+YV Sbjct: 301 IPTYYVIAPAEASSNLSRFDGVRYGYRAKDYTDLSDMYRKTRAEGFGEEVKRRILVGAYV 360 Query: 361 LSHGYYDAYYLQAQKIRRLIAEDFQRALAGENRQCDVIMGPVSPTVAWDLGDKTDDPVAN 420 LSHGYYDAYYLQAQKIRRLIA+DFQ+A QCDVIMGPV PTVAWDLGDK DDP+AN Sbjct: 361 LSHGYYDAYYLQAQKIRRLIAQDFQQAFT----QCDVIMGPVCPTVAWDLGDKADDPIAN 416 Query: 421 YLADIFTLSTSLAGLPGMSIPCGFGQGEKNAKRPVGLQIIGNYFDEARLLNVAHQFQQAT 480 YLADIFTLSTSLAGLPGMSIPCGFGQGEKN+KRPVGLQIIGNYF EA+LLNVAHQ+QQAT Sbjct: 417 YLADIFTLSTSLAGLPGMSIPCGFGQGEKNSKRPVGLQIIGNYFAEAKLLNVAHQYQQAT 476 Query: 481 DWHLREPA 488 DWHLR+PA Sbjct: 477 DWHLRQPA 484 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 215/476 (45%), Gaps = 62/476 (13%) Query: 5 TLKELSAQLQARKISATELATLFLDRIEASD--LNAFLHVDRALTLAQAQAADVRLAGND 62 +LK+L+A + R+++ ++A + IE + ++A+ H D + QA+ D A Sbjct: 8 SLKQLAACIARREVTVEDVARAGITHIEEYEPAVHAWQHFDPQQVIEQARRLD---AQPH 64 Query: 63 AGPLTGVPIAHKDIFVTRNWRTTAGSHMLQDYVSPFDATVVEQFNAAGTVTLGKLNCDEF 122 G L G+PI KD+ T + TT GS + ++Y DA V +AG V +GK EF Sbjct: 65 QGLLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLVDAACVAASRSAGAVLMGKTVTTEF 124 Query: 123 AMGSSNENSFYGPVKNPWDKT-AIPGGSSGGSAAAVAARLAPAATATDTGGSIRQPASLC 181 A GP +NP T PGGSS GSAAAVA+ + PAA AT T GSI +PA+ C Sbjct: 125 ATFQP------GPTRNPHGATDHTPGGSSSGSAAAVASGMVPAAFATQTAGSIVRPAAYC 178 Query: 182 GVTGIKPTYGSVSRYGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDERDSTSLQRPKE 241 GV G KPT+G++ G+ + + SLD G + + D + A+ R S Q E Sbjct: 179 GVVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNVADAAFFIGALA----RLPLSSQLAPE 234 Query: 242 DFTRSLNQSLQGLRIGVPREFFGAGLAADVEAAVRGALAEFEKLGATLVDISLPKTELSI 301 R LR+G+ R + A+ A+ E+ GA L DI LP Sbjct: 235 AAPR--------LRVGICRTPNWERASVATRDAIEQAVRLLERSGAVLRDIDLP------ 280 Query: 302 PVYYVIAPAEASSNLSRFDGVRYGHRAATYGNLDDMYKKSRAEGFGEEVKRRILVGSYVL 361 AP ++ ++ + Y AA + +S AEGF + + G + Sbjct: 281 ------APCGGLTD-AQIRIMSYEASAAF-----EPEARSHAEGFSKAFAAVLEAGRGID 328 Query: 362 SHGYYDAYYLQAQKIRRLIAEDFQRALAGENRQCDVIMGPVSPTVAWDLGDKTDDPVANY 421 Y A L A R+++A F+ D+++ P + A D T DP Sbjct: 329 GTSYVAAQALAAAS-RQMVAGVFE--------TVDILLAPSTEGEAPAGLDATGDP---- 375 Query: 422 LADIFTLSTSLAGLPGMSIPCGFGQGEKNAKRPVGLQIIGNYFDEARLLNVAHQFQ 477 IF SL G P + +P G G G P+G+ +IG + +A L A+ + Sbjct: 376 ---IFNRMWSLLGNPCVHVPLGAGPG----GMPIGVTLIGPRWGDASTLAAANLLE 424 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 180/416 (43%), Gaps = 58/416 (13%) Query: 66 LTGVPIAHKDIFVTRNWRTTAGSHMLQ--DYVSPFDATVVEQFNAAGTVTLGKLNCDEFA 123 L GV A KD+F RT AG+ + + + A VE+ + G +GK DE Sbjct: 42 LEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELT 101 Query: 124 MGSSNENSFYGPVKNPWDKTAIPGGSSGGSAAAVAARLAPAATATDTGGSIRQPASLCGV 183 + N+ YG +NP +PGGSS GS AAVAA LA A TD GGS+R PAS CGV Sbjct: 102 YSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCGV 161 Query: 184 TGIKPTYGSVSRYGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDERDSTSLQRPKEDF 243 G++PT+G +S +G + A S D G A T E L ++TS+ P Sbjct: 162 WGMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEH---LEQTFCALAHAETTSM--PATFL 216 Query: 244 TRSLNQSLQGLRIGVPREFFGAGLAADVEAAVRGALAEFEKLGATLVDISLPKTELSIPV 303 T LN S G+ ++ AV A F KL D +EL Sbjct: 217 T--LNDS---------------GINGLLDPAVFDA---FSKLKNEQSDFLAVDSEL---- 252 Query: 304 YYVIAPAEASSNLSRFDGVRYGHRAATYGNLDDMYKKSRAEGFGEEVKRRILVGSYVLSH 363 E +S + F ++ +G ++ A+ G ++++R + ++ Sbjct: 253 -------ELASWAAAFRILQASEAWMEHG----LWVTQHADELGVDIRQR-----FNIAA 296 Query: 364 GYYDAYYLQAQKIRRLIAEDFQRALAGENRQCDVIMGPVSPTVAWDL--GDKTDDPVANY 421 G AQ++R + R L + Q VI+ P PT A L T D V Sbjct: 297 GVTATQVRTAQEVRIAAIRELNRIL---DSQHKVIVLPTVPTPAPLLTADSATVDDVRMR 353 Query: 422 LADIFTLSTSLAGLPGMSIPCGFGQGEKNAKRPVGLQIIGNYFDEARLLNVAHQFQ 477 + ++ LAGLP +S+P G PVGL IIG + +L+ AH+ Q Sbjct: 354 SQHLLCIA-GLAGLPQLSMPWIQVNGA-----PVGLSIIGGRGCDEIVLHAAHKLQ 403 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 141/471 (29%), Positives = 200/471 (42%), Gaps = 55/471 (11%) Query: 20 ATELATLFLDRIEASDLNAFLHVDRALTLAQAQAADVR-LAGNDAG--PLTGVPIAHKDI 76 A LATL LD + + D +D+ AQ QA + R LA D PL GVP A KD Sbjct: 20 AALLATL-LDGLASDDAAWITLIDQPYLAAQLQALEARRLANPDLATLPLYGVPFAAKDN 78 Query: 77 FVTRNWRTTAGSHMLQDYVSPFDATVVEQFNAAGTVTLGKLNCDEFAMGSSNENSFYGPV 136 RTTA Y++ ATVV++ AG + +GK N D+FA G S YG V Sbjct: 79 IDVAGIRTTAACPEFA-YIAEQHATVVQRLLDAGAIVIGKTNLDQFATGLVGIRSPYGAV 137 Query: 137 KNPWDKTAIPGGSSGGSAAAVAARLAPAATATDTGGSIRQPASLCGVTGIKPTYGSVSRY 196 N +D + GGSS GSA+ VA L P + TDT GS R PA L + G+KPT GS+S Sbjct: 138 PNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPAGLNNIVGLKPTVGSLSGR 197 Query: 197 GMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDERDSTSLQRPKEDFTRSLNQSLQGLRI 256 G++ +LD A T D L+ GFD D+ S RP+ LN+ R Sbjct: 198 GVVPACRTLDCVSIFATTVADAELVFTQAAGFDAADAYSRARPEH----VLNKLPAKPRF 253 Query: 257 GVPR--EFFGAGL----AADVEAAVRGALAEFEKLGATLVDISLPKTELSIPVYYVIAPA 310 G+P EF+G + A AVR + A L +L D Sbjct: 254 GIPAQPEFYGDTIAAAAYAQALEAVRASGAVCIPLDFSLFD------------------- 294 Query: 311 EASSNLSRFDGVRYGHRAATYGNLDDMYKKSRAEGFGEEVKRRILVGSYVLSHGYYDAYY 370 + ++ L +DG R A + + K + V+ I + ++A Y Sbjct: 295 QVTALL--YDGPWVAERYAAI----EAFAKEHGDAIHPVVRDIIFRAREFSATDTFNAQY 348 Query: 371 LQAQKIRRLIAEDFQRALAGENRQCDVIMGPVSPTVAWDLGDKTDDPV-ANYLADIFTLS 429 A D +RA D ++ P +PT + + D DPV N +T Sbjct: 349 KLA---------DLKRAADKIMASVDALLVPTAPT-HYKIADVAADPVRRNSHMGKYTNF 398 Query: 430 TSLAGLPGMSIPCGFGQGEKNAKRPVGLQIIGNYFDEARLLNVAHQFQQAT 480 +L +++P ++ P GL +IG + + L Q+Q T Sbjct: 399 VNLLNWCALAVPANL----RSDGLPFGLTLIGPAWSDHALAAFGKQWQALT 445 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,094,635 Number of extensions: 45138 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 4 Length of query: 488 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 401 Effective length of database: 899,382 Effective search space: 360652182 Effective search space used: 360652182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)