BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4541.p
         (486 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979910|ref|YP_001351883.1| aspartyl/glutamyl-tRNA amidotra...   833   0.0  

>gi|152979910|ref|YP_001351883.1| aspartyl/glutamyl-tRNA
           amidotransferase subunit B [Janthinobacterium sp.
           Marseille]
          Length = 486

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/484 (86%), Positives = 451/484 (93%)

Query: 1   MQWEVVIGLETHTQLSTQSKIFSGSSTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60
           MQWEVVIGLETHTQL+TQ+KIFSGS T+FGAEPNTQ SPVDLALPG LPV+N+GAVERAI
Sbjct: 1   MQWEVVIGLETHTQLTTQTKIFSGSPTQFGAEPNTQTSPVDLALPGALPVMNRGAVERAI 60

Query: 61  QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKEGKTEIKTI 120
           QFGLAIGATIAP S+FARKNYFYPDLPKGYQISQ ++P+VQGG +SFA+E +GKTEI+++
Sbjct: 61  QFGLAIGATIAPHSVFARKNYFYPDLPKGYQISQMDLPIVQGGRVSFALEVDGKTEIRSV 120

Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180
            LTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEP+MRSAAEAV YAKALH+LV
Sbjct: 121 QLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPDMRSAAEAVAYAKALHTLV 180

Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLEEAINYEVRRQIEL 240
            WLGICDGNMQEGSFRCDANVSVRPVGQ+++GTRCEIKNLNSFRFLE+AINYEVRRQIEL
Sbjct: 181 TWLGICDGNMQEGSFRCDANVSVRPVGQKEYGTRCEIKNLNSFRFLEDAINYEVRRQIEL 240

Query: 241 IEDGGTVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300
           IEDGG VVQ TRLYDPDKKETR MRSKEDA DYRYFPDPDLPPL +S EWI RV+A MPE
Sbjct: 241 IEDGGRVVQATRLYDPDKKETREMRSKEDAHDYRYFPDPDLPPLVVSAEWIARVQAAMPE 300

Query: 301 LPAAMRERFVADYALPEYDAMVLTQSKGMASYFEAVVAAAGKEQAKPAANWLMGDVASTL 360
           LP AMRERFV DYAL EYDA VLTQSKGMA+YFEAVVAAAGKEQAKPAANWLMGDVASTL
Sbjct: 301 LPGAMRERFVRDYALSEYDAAVLTQSKGMANYFEAVVAAAGKEQAKPAANWLMGDVASTL 360

Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFASMWEAKSDKDSLADDIIEAKG 420
           NRED +IA APV AAQLALLL+RIADGTISNKIAKEVF +MWEAKSD   LAD++IE+KG
Sbjct: 361 NREDIEIAAAPVAAAQLALLLQRIADGTISNKIAKEVFGAMWEAKSDSAKLADELIESKG 420

Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480
           LKQISDSGALE IVD VLAAN KSV EFRAGKEQAINAL+GQAMKA++GKANPAQLTELL
Sbjct: 421 LKQISDSGALEKIVDDVLAANAKSVEEFRAGKEQAINALMGQAMKASKGKANPAQLTELL 480

Query: 481 RKKL 484
           +KKL
Sbjct: 481 KKKL 484


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,092,603
Number of extensions: 43970
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 399
Effective length of database: 899,382
Effective search space: 358853418
Effective search space used: 358853418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)