BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4538.p (534 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 520 e-149 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 514 e-147 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 501 e-143 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 491 e-140 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 441 e-125 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 520 bits (1339), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/512 (56%), Positives = 367/512 (71%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 + NLKI RL+ GF LL LM++M +G RL +G + D M Q L KER A +W +A+ Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 NG RT A K+ Q +FQKQ+D S + ++LQK++E+ I TPE+K+LFE + R Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADIN 180 YR+ RQ +F +K G A+ + + ++ M+ Y+NS+ + +KK+IDE I Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 181 HNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDAR 240 + SGRS+L+ L A + LG AW L SIT PLN+A+ +A++VA+GDLS++I+ + Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSN 242 Query: 241 DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETA 300 DETGQL+ ALK M +L V VR GTE+I SR+IA+GNLDLS+RTE+QA SL ETA Sbjct: 243 DETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETA 302 Query: 301 SVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIG 360 + M QLTSTV+QNADNARQAN LA SAS VA +GG+VV +VV TM+ I+ S+ KI DII Sbjct: 303 ASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIIS 362 Query: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVA 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI +SV Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVG 422 Query: 421 KVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQ 480 KV GS+LV +AG TM+E+V SV RVT+I+ EI ASQEQS GI QVN AI +D+ TQQ Sbjct: 423 KVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQ 482 Query: 481 NAALVEEAAAAARSMQDQAASLTEAVSVFRLD 512 NAALVEEAAAAA S+QDQA +L VS F+LD Sbjct: 483 NAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 293/524 (55%), Positives = 374/524 (71%), Gaps = 4/524 (0%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 + NLKIG RL + F +L+LM M+ +G WRL + AT M + A KER +W+ Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAA-HKERLTHEWYLGN 61 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 N +RT A ++S+D +Q+ FQK+++ QS ++S+LQ ++ A I + E K+L VG+ R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKL---MDDYANSVLRYAEFQKKVIDETAA 177 T Y + R+++F +K + T + K+ M Y SV FQ+ + A Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 178 DINHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDS 237 D++ Y SGR++L+ LG+ L+L A LAWLL+RSIT PL+ A+++A++VA+GDL ++I S Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQS 241 Query: 238 DARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLE 297 + DETGQLL AL+ MND L V +VR G E+I S +IA GNLDLS+RTE+QA SLE Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 298 ETASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIAD 357 ETAS ME+LTSTVKQNADNARQANQLA SAS VA +GG VV +VV TM QI+AS++KI D Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVD 361 Query: 358 IIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDE 417 IIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI + Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 418 SVAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEA 477 SV KV GS+LV +AG TM EVV SV VT+I+ EI ASQEQS GI QVN AI +D+ Sbjct: 422 SVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 478 TQQNAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPPA 521 TQQNAALVEEAAAAA S+ +QAA L EAVSVF+LD+ A P+ Sbjct: 482 TQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAPS 525 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 501 bits (1289), Expect = e-143, Method: Compositional matrix adjust. Identities = 301/536 (56%), Positives = 389/536 (72%), Gaps = 9/536 (1%) Query: 3 NLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAIKE 62 N+KIG RL +GF +L+L+ M G RL +I +A+ ++ +LKK++ A W A Sbjct: 5 NMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDWLLATSV 64 Query: 63 NGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLRTT 122 NGVRT A++KS DP QQ+FQK I AQS +++ +Q VEA++ TPEEKQLF VGK R Sbjct: 65 NGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGKKRAV 124 Query: 123 YRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSV---LRYAEFQKKVIDETAADI 179 Y + R+ IF +K+ G+ A+++ D+ ++ +D Y SV L + + + K+ D++ I Sbjct: 125 YVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQS---I 181 Query: 180 NHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDA 239 +Y SGR L+I L+LGAL+AW LT IT PL +AL++A+SVA GDL++R A Sbjct: 182 TADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTMPA 241 Query: 240 -RDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEE 298 DE G LL AL+ M D+L V ++R+GT++I S EIA+GNLDLS+RTEQQA SLEE Sbjct: 242 ANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLEE 301 Query: 299 TASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADI 358 TAS ME+LTSTVKQNADN+RQANQLA +AS VA +GG+VV +VV TM I+ S++KI DI Sbjct: 302 TASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVDI 361 Query: 359 IGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDES 418 IGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI +S Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGDS 421 Query: 419 VAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEAT 478 V KV GS+LVA+AG TM E+V V RV +I+ EIT ASQEQSDGI QVN AI +D+ T Sbjct: 422 VEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQVT 481 Query: 479 QQNAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPPANLQRGTSPSTVVR 534 QQNAALVEEAAAAA S+QDQA +L +AVSVF++ + ++ PA + T ST VR Sbjct: 482 QQNAALVEEAAAAAESLQDQAKNLAQAVSVFQIGSGYASSQPAAPR--TVQSTAVR 535 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 491 bits (1263), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/520 (53%), Positives = 352/520 (67%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 N+KIGARL +GF +L L I + G +L ++ T +M+++ + KER W A Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 K + RT V KS DPA+ Q+ K S + ++ +++E + T +EK+L+ + +R Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVR 123 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADIN 180 ++ R+ + +K G A + DT + D + N + E ++K +D A ++ Sbjct: 124 KSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLS 183 Query: 181 HNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDAR 240 + L++L A L G AW LT IT PL A+ A+ VA GDL++ I ++++ Sbjct: 184 DVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESK 243 Query: 241 DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETA 300 DE GQLL ALK MND LQ IVG VR+GTE+I S EIA GNLDLS+RTEQQA SLEETA Sbjct: 244 DECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETA 303 Query: 301 SVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIG 360 S ME+LTSTVKQNADNARQANQLA SAS+VA +GG VV QVV TMS I+ SS KI DII Sbjct: 304 SSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIIS 363 Query: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVA 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASAAKEIK LI +SV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVG 423 Query: 421 KVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQ 480 KV G++LVA+AG TM E+V+S+ RVT+I+GEIT ASQEQS GI Q+N AI +D TQQ Sbjct: 424 KVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQ 483 Query: 481 NAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPP 520 NA+LVEEAAAAA SMQDQA L + V F+LD A PP Sbjct: 484 NASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPP 523 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 441 bits (1133), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/521 (50%), Positives = 351/521 (67%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 + N +IG RL IGFI +L L + + +AT M++ L KER W+ I Sbjct: 4 LSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWYVFI 63 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 RT + +S D + F I + + S L K +E IT+ E++L++ +LR Sbjct: 64 YSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTIELR 123 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADIN 180 Y++ ++++ + KK G+ A I + Y VL + Q+K ID+ + DI+ Sbjct: 124 KAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISRDID 183 Query: 181 HNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDAR 240 ++ ++++ LG ++LGA A ++TRSIT PL A+ +A A GDL+ I ++ Sbjct: 184 DAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGKPSK 243 Query: 241 DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETA 300 DE G L+ AL MND L+ IV V+ GT+ IN S EIA GNLDLS+RTEQQA SLEETA Sbjct: 244 DEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLEETA 303 Query: 301 SVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIG 360 S ME+LTSTVKQNA+NA+QANQLA SAS VA++GGAVV ++++TM I++SS KI DIIG Sbjct: 304 SSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVDIIG 363 Query: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVA 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI +SV+ Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSVS 423 Query: 421 KVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQ 480 V GS+LV++AG TM +VV+S+ VT+I+ EI ASQEQS GI QVN AI+ +D+ TQQ Sbjct: 424 NVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQQ 483 Query: 481 NAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPPA 521 NAALVEEAAAA++S++DQA L + V+VF+LD R A+ A Sbjct: 484 NAALVEEAAAASQSLRDQADKLAQIVNVFKLDERQPASAQA 524 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,952 Number of extensions: 27071 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 21 Length of query: 534 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 446 Effective length of database: 895,685 Effective search space: 399475510 Effective search space used: 399475510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)