BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4536.p (419 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981550|ref|YP_001352352.1| beta-ureidopropionase (N-carbam... 274 7e-75 gi|152981424|ref|YP_001352201.1| unknown domain/N-carbamoyl-L-am... 193 1e-50 gi|152982577|ref|YP_001351722.1| allantoate amidohydrolase [Jant... 163 1e-41 >gi|152981550|ref|YP_001352352.1| beta-ureidopropionase (N-carbamoyl-beta-alanine amidohydrolase) [Janthinobacterium sp. Marseille] Length = 430 Score = 274 bits (701), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 170/407 (41%), Positives = 213/407 (52%), Gaps = 18/407 (4%) Query: 12 IDGARLWNSLMELAQIGGTPKGGVCRLALTDLDKQGRDLVTSWARAEGMSVVVDQIGNIF 71 ++ RL +++ LA GG GGV R LT +D + R + + ARA G V +D N+F Sbjct: 19 VNSNRLQDAIAALAAFGGRDDGGVARETLTAIDLEARRHLITSARALGCEVEIDDCANLF 78 Query: 72 MRRPGRNNALPPVMTGSHIDTQPTGGKFDGNYGVLAGIEVIRTLNQHNIQTEAPIEVAVW 131 RRPG + LPPV+TGSH DTQP GGK DG YGVLAG+EVI LN IQT+ IEV W Sbjct: 79 FRRPGTTD-LPPVLTGSHADTQPVGGKLDGAYGVLAGLEVIAALNDAGIQTQRAIEVVAW 137 Query: 132 TNEEGSRFVPVMMGSGVFCGAFTLEHAYHATDVD----GKNVRDELERIGYIGEQVCGEH 187 TNEEGSRF P MGS F L D D G V L+ + + Sbjct: 138 TNEEGSRFGPGAMGSSAFVDPSRLPAYREVKDGDNITFGAAVDTALQAAADVKHRGL-RQ 196 Query: 188 PIGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDALQV 247 PI + E HIEQGPVLE A+ +GVV + + WY G +HAG TPM+ R DA++ Sbjct: 197 PIASCVELHIEQGPVLERANAALGVVTGIQSVRWYRVECVGMAAHAGTTPMDERSDAMKA 256 Query: 248 STYIMQEVVAIAHRYAPYG-RGTVGQVQVLPNSRNVIPGQVKFSIDLRNVSEASLTRMHE 306 + + Q++ A A R T+G+ QV PNS N IPG V+F+ID+R V A L R + Sbjct: 257 AVTLAQQLYTHAAAEAANNLRLTLGRWQVGPNSVNTIPGNVEFTIDVRCVDAAVLERFEQ 316 Query: 307 DLLAYLEAM--RKKTGLSIELERVSYFPPCPFHPHCVD-----NVRAAAAALGYKTMDVV 359 L + A R K G R PP F + VRA A + Sbjct: 317 FLTQTVAAYQWRGKIGFECFFSR----PPTIFPQDMLSLIEQACVRAGTLARRGAPQHLT 372 Query: 360 SGAGHDAIYAARLAPAGMIFVPCKDGVSHNEIEDARPEHLEAGCNVL 406 SGA HDA+Y A P MIFVP K G+SHN E+ PE L G L Sbjct: 373 SGAFHDAMYLAEYCPTAMIFVPSKGGISHNAAEETAPEDLYLGVQAL 419 >gi|152981424|ref|YP_001352201.1| unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein [Janthinobacterium sp. Marseille] Length = 588 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 189/385 (49%), Gaps = 13/385 (3%) Query: 32 KGGVCRLALTDLDKQGRDLVTSWARAEGMSVVVDQIGNIFMRRPGRNNALPPVMTGSHID 91 +G + ++D ++ + ++ W R GM V +D +GN+ R + ++TGSH D Sbjct: 199 EGALTCTYMSDAHRRTANQISDWMRTAGMHVHIDAVGNVVGRYLATDPRAKTLITGSHYD 258 Query: 92 TQPTGGKFDGNYGVLAGIEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSGVFCG 151 T GGK+DG G+L I V++ L++ EV + EEG RF +GS G Sbjct: 259 TVRNGGKYDGREGILLAIAVVKHLHERGETLPFHFEVIAFAEEEGVRFKSTFLGSNAVIG 318 Query: 152 AFTLEHAYHATDVDGKNVRDELERIGY----IGEQVCGEHPIGAYYEAHIEQGPVLENAD 207 F +E TD DG ++R+ + + G+ I + + Y E HIEQGPVL D Sbjct: 319 QFNME-LLDITDRDGISMREAITQAGHDVNAIPQIARNPADVLGYVEVHIEQGPVLLQRD 377 Query: 208 TVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKD----ALQVSTYIMQEVVAIAHRYA 263 +G+V ++ G S Y G SH+G TPM +RKD A ++ Y+ Q H Sbjct: 378 LPVGIVTSIAGSSRYQVEFRGVASHSGTTPMSMRKDAAAAAAEIILYVEQRCAQDQHASL 437 Query: 264 PYGRGTVGQVQVLPNSRNVIPGQVKFSIDLRNVSEASLTRMHEDLLAYLEAMRKKTGLSI 323 GTVGQ+QV S NVIPG+ FS+D+R ++ D+L ++ + + + Sbjct: 438 V---GTVGQLQVPSGSTNVIPGRCVFSLDIRAAVDSIREAAVADILQHIADVCARRNIEY 494 Query: 324 ELERVSYFPPCPFHPHCVDNVRAAAAALGYKTMDVVSGAGHDAIYAARLAPAGMIFVPCK 383 + E P P P + + AA G + ++ SGAGHDA+ A++ M+F C Sbjct: 495 KAELSVSAPAAPCAPWLMKQLSAATERAGVRPFELASGAGHDAMTIAKMTDVAMLFTRCG 554 Query: 384 D-GVSHNEIEDARPEHLEAGCNVLL 407 + G+SHN +E + E +LL Sbjct: 555 NGGISHNPLETMTADDTEVSAQILL 579 >gi|152982577|ref|YP_001351722.1| allantoate amidohydrolase [Janthinobacterium sp. Marseille] Length = 424 Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/381 (32%), Positives = 178/381 (46%), Gaps = 7/381 (1%) Query: 32 KGGVCRLALTDLDKQGRDLVTSWARAEGMSVVVDQIGNIFMRRPGRNNALPPVMTGSHID 91 +G + R LT + + +W R GM+V D +GN+ R G + + P +MTGSH D Sbjct: 30 EGMMTRTYLTPAHRGAAGQIAAWMRDAGMTVRRDAVGNVIGRYEGIDASKPVLMTGSHFD 89 Query: 92 TQPTGGKFDGNYGVLAGIEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSGVFCG 151 T GG +DG G+L I I ++ + P+EV ++ EEG RF M+GS G Sbjct: 90 TVRNGGIYDGLLGILLPISCIAKWHRQGRRFPFPLEVIAFSEEEGVRFKAPMLGSRAIAG 149 Query: 152 AFTLEHAYHATDVDGKNVRDELERIGY----IGEQVCGEHPIGAYYEAHIEQGPVLENAD 207 F H TD G +RD ++ I I A+ E HIEQGPVL N D Sbjct: 150 TFEQRVLSH-TDNQGITMRDAMKAADLNPAQIASAAAARDSIAAFIEVHIEQGPVLLNED 208 Query: 208 TVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDALQVSTYIMQEVVAIAHRYAPYGR 267 +GVV A+ G + Y + G HAG PM +R+DA + V R P Sbjct: 209 LPLGVVTAIAGATRYMLELEGLAGHAGTVPMHMRQDAAMAAAEFAL-FVERRCRSRPDLV 267 Query: 268 GTVGQVQVLPNSRNVIPGQVKFSIDLRNVSEASLTRMHEDLLAYLEAMRKKTGLSIELER 327 GT+GQ V + NVIPG+ S+D+R +A D+ LE + + + L + Sbjct: 268 GTIGQWTVPNGATNVIPGRAILSLDVRAGDDAERLSAMVDITMELEHICARRKVRSTLTK 327 Query: 328 VSYFPPCPFHPHCVDNVRAAAAALGYKTMDVVSGAGHDAIYAARLAPAGMIFVPCKD-GV 386 P + +A+ A G + + SGAGHDA+ A +AP M+FV C + G+ Sbjct: 328 TYETPSAICAGWLQEGWQASLARHGCASRSLPSGAGHDAMAIAAVAPIAMLFVRCGNGGI 387 Query: 387 SHNEIEDARPEHLEAGCNVLL 407 SH+ E E +V + Sbjct: 388 SHHPTETMTMEDAALASDVFM 408 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,047,934 Number of extensions: 46257 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 3 Length of query: 419 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 333 Effective length of database: 903,079 Effective search space: 300725307 Effective search space used: 300725307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)