BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4535.p (234 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 216 9e-58 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 202 1e-53 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 195 2e-51 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 184 5e-48 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 180 6e-47 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 216 bits (550), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 162/229 (70%), Gaps = 1/229 (0%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLF 61 +L+++++H +YGKSH+L G+ + + +GE+V+LLGRNGAG++TT+K+ +G+V A G + F Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVA-ATGTIRF 62 Query: 62 EGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRLK 121 +GK I GLP+Y+IA +G+ V E R IF L+V +NL + A+ +S W +++Y +FPRL+ Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSADDMYRLFPRLQ 122 Query: 122 ERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIKSTGM 181 ER+ G LSGGEQQMLA+ R LM P ++M+DEP EGLAP +V + ++++ G+ Sbjct: 123 ERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELVQRGV 182 Query: 182 SIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLGV 230 S++L+EQ L + +++ R Y++ G++V+ GS AD V+ +LGV Sbjct: 183 SVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 156/235 (66%), Gaps = 7/235 (2%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPA--QGQV 59 +L++ + YG ++GV L+V GE++TL+G NGAGKTTTLK+I G +P +G + Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 60 LFEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKES-----AWGLEEIY 114 + G+ I GL S+++ + + +VPE RG+F ++++ENL M A A +++ + Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKWF 124 Query: 115 AIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIK 174 +FPRLKER G LSGGEQQMLA+ARALM+HP +L+LDEP GL+P++V++I I+ Sbjct: 125 GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 175 QIKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + + G++I+LVEQN ++ Q A+R Y++E G + G Q L+D V++ YLG Sbjct: 185 TVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 152/233 (65%), Gaps = 5/233 (2%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLF 61 +L+++++ YG + + +SL+V GE+VTL+G NGAGK+TTL++I G+ P A G + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 62 EGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAA--RKESAW---GLEEIYAI 116 G ++SG ++ G+ PE R +F LTV EN+ M A RK+ A +E ++ Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQI 176 FPRL+ER + G LSGGEQQMLAIARALM+ P ++M DEP GLAP IV++I + I++I Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 177 KSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 +S G ++++VEQN + DR Y++E G IV GS+A+ A+ ++ YLG Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 184 bits (467), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 6/228 (2%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLF 61 +LQV ++ YYG +H L+G+SL V+ G+ ++LLGRNG GKTT LK ++GV+P A G V Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 62 EGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLE----EIYAIF 117 +G+ I+ L +Q AA G+ VP+ R IF LTVEENL M +S E+Y +F Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIK 177 P LKE GG LSGG+QQ LAIARAL+ P +++LDEP EG+ P I+ +I I ++ Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 178 STG-MSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVK 224 G + I+L EQ + +LAD ++ +G +V SGS Q + D+ VK Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQ-QEMDDDNVK 227 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 180 bits (457), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 140/223 (62%), Gaps = 5/223 (2%) Query: 12 YGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLFEGKVISGLPS 71 Y K ++L VS++V G++ +LG NGAGK+T ++SI+G+ PP QG++L+ GK ++G + Sbjct: 13 YDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWGGKNLAGEKT 72 Query: 72 YQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWG-----LEEIYAIFPRLKERRKN 126 + I A G+ +PE R +F +TV ENL + A ES+ L +Y IFPRLKER Sbjct: 73 HNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYEIFPRLKERAAQ 132 Query: 127 GGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIKSTGMSIILV 186 G +SGGEQ M++I R LM P +L++DEP GL+P+ V E IKQI + G++++LV Sbjct: 133 LAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQINALGITVLLV 192 Query: 187 EQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 EQN ++ Y++ QGR++ G+ +++ V+ Y G Sbjct: 193 EQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,253 Number of extensions: 22130 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 66 Length of query: 234 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 154 Effective length of database: 925,261 Effective search space: 142490194 Effective search space used: 142490194 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)