BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4534.p (255 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 167 4e-43 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 159 2e-40 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 141 3e-35 gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 141 4e-35 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 139 2e-34 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 167 bits (424), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 5/250 (2%) Query: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 L+ VT R TAV+ + + AG + S+IGPNGAGKTT ++ ++G T G + + Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFTS 125 G ++ + + Q GL RSFQ TS+F +V EN+ A + L R ++F Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 126 ACA----LADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMG 181 A A++LL L L A A + LS+G+QR L VG+A+A +PKV+ LDEP +G+ Sbjct: 130 EEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLN 189 Query: 182 IDDIAEMKQLIHGL-RRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 + K+++ + + TV+L+EH+M +VM ISD I V+ G+++A G P+EI++D Sbjct: 190 PSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDPE 249 Query: 241 VRRAYLGSMI 250 V RAYLGS I Sbjct: 250 VIRAYLGSGI 259 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 150/255 (58%), Gaps = 9/255 (3%) Query: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 MS+ L+ V KR+G + G +L + G ++IGPNGAGK+TLF+ ++G P++ G Sbjct: 1 MSQLALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSG 60 Query: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAAL----NP 116 IL+ G +A + ++GL+RSFQ+T++F LSV ENLR A L +L + Sbjct: 61 DILLNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAV-----LWSLGYRYSF 115 Query: 117 WKRAEQFTSACALADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEP 176 W+R A++++ + L LS+ +QR LE+G+ +AG +V+ LDEP Sbjct: 116 WQRLNGLQDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEP 175 Query: 177 TSGMGIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIR 236 T+GM + +LI + T++++EH+MD+V ++DRI V+ G+I+A P IR Sbjct: 176 TAGMSRSESDAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIR 235 Query: 237 SDERVRRAYLGSMIT 251 ++ V++AYLG++ T Sbjct: 236 NNPLVQQAYLGTVET 250 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 141 bits (356), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 5/248 (2%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 IL V+KR+G A++ + + I G ++ +IGPNGAGKTT F+ +TG GS + Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAP---LAALNPWKRAE 121 G+ + ++ + G+AR+FQ LF ++ EN+ + R A+ K A Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 122 QFTSAC-ALADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 + + A ELL + + A R LS+G QRRLE+ A+A P+++ LDEP +GM Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 185 Query: 181 GIDDIAEMKQLIHGLRRD-YTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDE 239 + +++L+ ++ + T++LIEH++ ++M + DRITV+ G+ +A+G PA+++ D Sbjct: 186 NATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKDP 245 Query: 240 RVRRAYLG 247 V AYLG Sbjct: 246 AVIEAYLG 253 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 141 bits (355), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 8/247 (3%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 IL ++T + F A+N + LDI G + +IGPNGAGKTT+ +TG T T G+ Sbjct: 45 ILYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFF 104 Query: 65 -EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQ-GRAPLAALNPWKRAEQ 122 + ++ L G+ R FQ ++F +V ENL LA + + L +EQ Sbjct: 105 GQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLNSEQ 164 Query: 123 FTSACALADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 +E+L + L R LSHGQ++ LE+GM + P++I LDEP +GM Sbjct: 165 IGKI----EEILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPVAGMSD 220 Query: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDIS--DRITVMQLGQILAQGKPAEIRSDER 240 + A +L++ LR ++++++EH+M V +I+ D++TV+ G +LA+G ++++DER Sbjct: 221 AETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQVQADER 280 Query: 241 VRRAYLG 247 V YLG Sbjct: 281 VIEVYLG 287 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 135/239 (56%), Gaps = 9/239 (3%) Query: 11 VTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVEGEEVA 70 + K YG V + L +E+G V ++GPNGAGKTT F+ + G P G I ++G +++ Sbjct: 10 LQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDIS 69 Query: 71 HLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQ-GRAPLAALNPWKRAEQFTSACAL 129 LP ++R Q GL+ Q S+F LSV +N+R + R ALN + ++ Sbjct: 70 RLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQRL------ 123 Query: 130 ADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDIAEMK 189 D LL L ++ + LS G++RR+E+ A+A P+ + LDEP +G+ + E++ Sbjct: 124 -DTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 190 QLIHGLR-RDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAYLG 247 +++ L+ R V++ +HN+ + I DR ++ G +LA G+P +I ++E VRR YLG Sbjct: 183 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIANESVRRVYLG 241 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,591 Number of extensions: 21191 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 61 Length of query: 255 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 174 Effective length of database: 921,564 Effective search space: 160352136 Effective search space used: 160352136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)