BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4533.p (332 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 118 5e-28 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 114 9e-27 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 101 7e-23 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 90 2e-19 gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 89 3e-19 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 153/325 (47%), Gaps = 42/325 (12%) Query: 29 LATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVLL---------------- 72 L + + +A+AAL +L+ GYTG++S G G+FF +G Y G+ L Sbjct: 50 LVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLPD 109 Query: 73 ----LQWKL---------ALLPALALAALGGALVALLVGWFSIRQR--GTYFVMLTLAFA 117 L WK A+ L L L+A + G+F+ R R G YF ++T A Sbjct: 110 FMVFLNWKEYPWYWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAMT 169 Query: 118 QMFYFLAYTMKDVTGGDNGLLDIPRPPLSLFGLTLLATTSSWQYYAVVAILFVLVFWLLQ 177 F L + GG+NG D R + G T+ ++ Y V + ++ + Sbjct: 170 FAFMLLFFRNDTGFGGNNGFTDFKR----ILGFTITDPSTKAVLYLVTLAFLLAALFVCR 225 Query: 178 RVVDSVLGKTLLAVRENEARASALGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLS 237 +V S LG+ L VR++E+R +GY+ KL + +S V G+AG L+ G+ S Sbjct: 226 AIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPS 285 Query: 238 NIEYHTSEAILVMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPR-WLMLLGLLLIAVSL 296 + S +++ +GG G+L ++GA + +W + +P WL LGL+ I V+L Sbjct: 286 EMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFIFVTL 345 Query: 297 YMQKGLFGLAMKIIDAVRGRKEDPA 321 +M +G+ GL K +K++ A Sbjct: 346 FMPQGILGLVKKF------KKQEAA 364 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 114 bits (285), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 19/303 (6%) Query: 28 TLATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVLLLQWKLALLPALALAA 87 TL +A+ LG NLL GY GL+SFG +F +G+Y A ++ + + + L A Sbjct: 53 TLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTGMISFEMMLLTA 112 Query: 88 LGGA-LVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLS 146 + + ++++ + W + R G +F MLTL+F +F+ +TGGD+G+ +PRP S Sbjct: 113 VVASFIISIPIAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGDSGM-RVPRP--S 169 Query: 147 LFGLTLLATTSS------WQYYAVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASA 200 LFG+ L + + YY +V +L L+ W++ R+V S G L+A R+N +A Sbjct: 170 LFGMELDQFDKTAFLGGPFYYYCLVMVL--LLTWVMWRIVRSPYGIHLMASRDNAIKALY 227 Query: 201 LGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLF 260 LG +R ++ AFV+S + G + + TG+A + S ++ M V+GG Sbjct: 228 LGVKIRSVRAIAFVVSAVYASIGGVILGVNTGLADPELAYWTHSGHLVFMAVLGGYQEFL 287 Query: 261 ASVLGASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGLFGLAMKIIDAVRGRKEDP 320 VLGA ++L+ + LS+L W LG +L + + + G+ G A+R K Sbjct: 288 GPVLGAFVFILLQDELSSLTQYWRFFLGAILAILVVVLPGGIMG-------AIRKFKSKG 340 Query: 321 AQS 323 Q+ Sbjct: 341 EQA 343 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 101 bits (251), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 167/330 (50%), Gaps = 23/330 (6%) Query: 21 PLLLPSG---TLATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVLLLQWKL 77 PL+ P ++ V +F +AA+ NLLLGYTG +S G FFG+G+YT +L L + + Sbjct: 18 PLIWPDPYLLSVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDV 77 Query: 78 AL-----------LPALALAALGGALVAL---LVGWFSIRQRGTYFVMLTLAFAQMFYFL 123 L P A G A A+ L+G + R RG YFV++T++FAQ+ + Sbjct: 78 TLWGMTEPLVVTAKPVWVSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMV 137 Query: 124 AYTMKDVTGGDNGLLDIPRPPLSLFGLTLLATTSSWQYYAVVAILFVLVFWLLQRVVDSV 183 + D+T G L +IP + + G ++ S Y +V + V+ + L+ +V S Sbjct: 138 SLNWVDLTEGPMALNNIPALTMWVPGEGVIDLASKLSTYWLVLAVAVVSYLLVAAIVHSR 197 Query: 184 LGKTLLAVRENEARASALGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHT 243 +G+ ++A+RENE A ++G V A + + + G AGGL+A + + Sbjct: 198 IGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHTVRIIDPDVFMFMF 257 Query: 244 SEAILVMTVIGGTGNLFASVLGASFYVLVGNWLS-TLWP--RWLMLLGLLLIAVSLYMQK 300 + +++M ++GG G L V+G + L+ L + P +W M+ G+L+IAV ++M K Sbjct: 258 TIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSPEIQW-MIYGVLMIAVLVFMPK 316 Query: 301 GLFGLAMKIIDAVRGRKEDPAQSATVTKEK 330 G+ A ++ R + ++ V + K Sbjct: 317 GVVPSAGNLLR--RYSAKSMSEQTPVVRRK 344 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 14/279 (5%) Query: 33 VLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVLLLQWKLALLPALALAALGGAL 92 VL+++ A +G L G+ G+ +F FFG+GSYT VL L L +A++ + A+ Sbjct: 100 VLLYSTACMGLTLQFGFVGVANFAGAAFFGIGSYTTAVLATHTGLPQLANIAISGVVAAI 159 Query: 93 VALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLSLF---- 148 + ++ +R RG Y ++T+AF +F + DV GG GL P + LF Sbjct: 160 IGSVLILPVLRTRGHYAALVTIAFGILFKTF-IEVNDVLGGPQGL---QVPGMQLFGHAF 215 Query: 149 --GLTLLATTSSWQYYAVVAILFVLV---FWLLQRVVDSVLGKTLLAVRENEARASALGY 203 G TL S+ Y + V + V+ F L++ + S +G ++ VR +E A+ G Sbjct: 216 NEGFTLFGIEFSF-YVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFGL 274 Query: 204 DVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASV 263 + K+ AF + G+AG ++ MM G +N + S ++ + ++GG GN + Sbjct: 275 HIARWKVIAFTMGNLFAGIAGSVYGMMVGFIAPNNFTFSDSLLLVSIAILGGLGNPVGLI 334 Query: 264 LGASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGL 302 A +++ L + ++L L+IA+ L+ +GL Sbjct: 335 PAAIIVLMLPEKLQFIQEYRVLLYAALVIAILLFRPEGL 373 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 155/356 (43%), Gaps = 60/356 (16%) Query: 34 LVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVL---------------------L 72 L++ + ALG N+++G+ GL+ G F+ +G+Y +L Sbjct: 47 LLYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGET 106 Query: 73 LQW-----------KLALLPALALAALGGALVALLVGWFSIRQRGTYFVMLTLAFAQMFY 121 L W L+L + LAAL L+G +++ RG Y ++TL F ++ Sbjct: 107 LLWVFGPEIAQNGIHLSLWAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIR 166 Query: 122 FLAYTMK---DVTGGDNGLLDIPRPPLSLFGLTL--------------LATTSSWQYYAV 164 + ++T G G+ I P+ +FG++L A S YY + Sbjct: 167 IFMNNLNGPVNITNGPQGINMID--PIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFL 224 Query: 165 VAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDVRLLKLAAFVISGAVTGLAG 224 L + + ++ R+ +S LG+ +A+RE+E A A+G + R +KL AF + + G+AG Sbjct: 225 FLFLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAG 284 Query: 225 GLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLGASFYVLVGNWL-STLWPRW 283 + A G + S A+L M V+GG G++ VLG + L + P Sbjct: 285 AMFASFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQ 344 Query: 284 LMLLGLLLIAVSLYMQKGLFGLAMKIIDAVR-------GRKEDPAQSATVTKEKHS 332 L G +LI + Q L+GLAM +I R + ED + T +K + Sbjct: 345 QSLFGEVLIDAEVLRQL-LYGLAMVLIMLYRPSGLWPSPKSEDRPTADNDTAKKST 399 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 576,803 Number of extensions: 20421 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 9 Length of query: 332 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 248 Effective length of database: 910,473 Effective search space: 225797304 Effective search space used: 225797304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)