BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4532.p (288 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 150 6e-38 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 141 5e-35 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 129 2e-31 gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 102 2e-23 gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 92 5e-20 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 150 bits (380), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 165/286 (57%), Gaps = 9/286 (3%) Query: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDL-GLS 59 M+ L N + +G Y LL +GL+++FG++R VNF+HG + LGAY+ + V + G++ Sbjct: 1 MDQLLQHTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMN 60 Query: 60 FWWSLLVAPLGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNN 119 F+ SL+VA + LF +E F+LR +L +G+ +++Q A + WG + + Sbjct: 61 FFGSLIVAAIVGFLFGTAIEYFLLRRRDLKAIDEVMLIMIGVMIIMQNAELLMWGGVAKS 120 Query: 120 VSPPDLLQGVVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVS 179 V P Q ++WG+ RLFV+ + ++ + ++E +RLG +RA + + Sbjct: 121 VPSP-FSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAK 179 Query: 180 LLGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWG 239 ++G+N++ +++L FALG+ A +AGAL AP+ P MG A AF +V++GGLG+ G Sbjct: 180 IVGVNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPG 239 Query: 240 ALIGGILVGIVQSV----MSTVWSEGAHLMIYVAMAAVMLLRPNGL 281 A +GG ++ IV+ +ST + + ++ + AVM+ RP GL Sbjct: 240 AALGGFILAIVEEFGAGYISTAYRDALGFLVIL---AVMIFRPQGL 282 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 149/276 (53%), Gaps = 8/276 (2%) Query: 19 FLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDLGLS-------FWWSLLVAPLGV 71 FL+A GL ++FG+ R +N + G+ + LGAY VT LS F + LL A + + Sbjct: 19 FLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHLFPFVLLGAGIVI 78 Query: 72 GLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVSPPDLLQGVVI 131 GL +ER + R +Y P F +L T + L+ Q+ + WG + + G + Sbjct: 79 GLIGIPLERLI-RTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQLPNVSMTFGTMS 137 Query: 132 WGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRIFSL 191 P Y + VI + +A+ + + L T+ G I+RA +E+ E + +G+N+ R++ + Sbjct: 138 AFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRETSAAMGINVTRVYVM 197 Query: 192 VFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVGIVQ 251 VF LG + GAL P A MGVE + AF VVVIGGLGS GA +G ++VG+++ Sbjct: 198 VFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMKGAAVGALIVGLIR 257 Query: 252 SVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGA 287 ++ + + E L IY + AV++ +P GL G+ A Sbjct: 258 ALSAMYYPEAEILAIYAIVLAVLIWKPAGLYGKAEA 293 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDLGLSF 60 M L+ + NG+ G+L F+L+ GL+++F ++ +NF+H +F+++GAY + +++ + F Sbjct: 1 MEFTLISLLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISN-AIGF 59 Query: 61 WWSLLVAPLGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV 120 W +L++APL VGL +VERF LR V+ +LFT G++ VI E V WG + Sbjct: 60 WPALVLAPLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPY 119 Query: 121 S-PPDLLQGVVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVS 179 S PP+L + + +P YR F++ + +M +++ L TR+G +++A +MV Sbjct: 120 SIPPELQGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVE 179 Query: 180 LLGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALG 223 LG N+ R+F VFA G A AGLAG + +P M ALG Sbjct: 180 ALGHNVPRVFMWVFAGGCALAGLAGVIGGNAFVTEPNMA-HALG 222 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 164/308 (53%), Gaps = 29/308 (9%) Query: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDL---- 56 M+I++ QI NG+ +G +Y L+A+G ++V+G+L +NF+HG ++GA + + Sbjct: 1 MDIFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTV 60 Query: 57 --GLSFWWSLLVAPLGVGLFAWVV----ERFVLRHVYALPHHFHILFTVGMALVIQEAVI 110 L L++A LG V ER R + P ++ +G+++++Q + Sbjct: 61 APDLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAM 120 Query: 111 STWG----PLGNNVSPPDLLQGVVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGS 166 WG P + P + L I G+ + P + +I L AV LL ++E TR+G Sbjct: 121 MIWGRSPIPFPQEM-PTEPLH---IMGALISPTQVMLLI-LAAVAMGLLVLLIEKTRMGR 175 Query: 167 IVRAGSESTEMVSLLGLNINRIFSLVFALGAATAGLAGAL-AAPIRGADPFMGVEALGIA 225 +RA SE+ + L+G++ NR+ + FA+GA A +AG + AA A MG A Sbjct: 176 AMRATSENPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKA 235 Query: 226 FVVVVIGGLGSFWGALIGGILVGIVQSVMSTVWSE------GAH---LMIYVAMAAVMLL 276 F V+GG+G+ +GA++GGIL+G+++S+ + + G+H + +V + V+ L Sbjct: 236 FSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTL 295 Query: 277 RPNGLLGR 284 RP+G++G Sbjct: 296 RPSGIMGE 303 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 12/287 (4%) Query: 11 GVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDLGLSFWWSLLVAPLG 70 G+ +G + L A+GL+I FGL+ +N +HG ++GAY + + F+ + A L Sbjct: 249 GISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAIDAYLL 308 Query: 71 VGLFAWVV---------ERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVS 121 V L A + ER V+R +Y P +L T G++L++ + V S +G V+ Sbjct: 309 VALPAAFIVAAAVGIALERLVIRWLYGRPLE-TLLCTWGISLILMQGVRSIFGAQNVEVA 367 Query: 122 PPDLLQG-VVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL 180 P + G V + GS V R+ +I + L +W +L TRLG VRA ++ M + Sbjct: 368 NPSWMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMAAC 427 Query: 181 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA 240 +G++ +I + F LG AGL G + + P +G + +F+VVV+GG+G G Sbjct: 428 VGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGT 487 Query: 241 LIGGILVGIVQSVMSTVWSEG-AHLMIYVAMAAVMLLRPNGLLGRPG 286 +I +G V + V A + I V + + RP GL G Sbjct: 488 VIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIIFIQKRPQGLFALKG 534 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.146 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 592,826 Number of extensions: 24234 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 10 Length of query: 288 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 206 Effective length of database: 917,867 Effective search space: 189080602 Effective search space used: 189080602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)